LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
RP5-908M14.5
hsa-miR-124-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618678
Biotype: antisense
Gene id: ENSG00000233017
Gene Name: RP5-908M14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-175
0.027
1
RP11-489G11.3
hsa-miR-124-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000563631
Biotype: lincRNA
Gene id: ENSG00000261646
Gene Name: RP11-489G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1858-1877
0.027
1
RP11-356J5.12
hsa-miR-124-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000504610
Biotype: lincRNA
Gene id: ENSG00000250303
Gene Name: RP11-356J5.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2294-2309
0.013
0
6mer
133-154
0.005
2
6mer
428-447
0.004
1
6mer
2625-2648
0.003
1
6mer
2233-2249
0.001
0
RP11-114H24.3
hsa-miR-124-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569892
Biotype: lincRNA
Gene id: ENSG00000261403
Gene Name: RP11-114H24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-49
0.027
0
FLJ41278
hsa-miR-124-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_033988.1
Biotype: lincRNA
Gene id: NR_033988.1 (gene)
Gene Name: FLJ41278
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2871-2890
0.020
1
7mer
963-985
0.005
1
6mer
1660-1673
0.001
1
AP000662.4
hsa-miR-124-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530595
Biotype: sense_overlapping
Gene id: ENSG00000254602
Gene Name: AP000662.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2002-2029
0.024
0
6mer
1213-1236
0.003
0
XLOC_004327
hsa-miR-124-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009916
Biotype: transcript isomorph
Gene id: XLOC_004327
Gene Name: XLOC_004327
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-152
0.027
0
DPP10-AS3
hsa-miR-124-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417844
Biotype: antisense
Gene id: ENSG00000231538
Gene Name: DPP10-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-177
0.022
3
6mer
284-295
0.005
1
LINC01120
hsa-miR-124-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_036499.1
Biotype: lincRNA
Gene id: NR_036499.1 (gene)
Gene Name: LINC01120
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-218
0.016
0
6mer
303-318
0.005
0
6mer
2693-2706
0.003
0
6mer
1730-1749
0.002
0
RP11-382J12.1
hsa-miR-124-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518152
Biotype: antisense
Gene id: ENSG00000246366
Gene Name: RP11-382J12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-103
0.027
2
TMEM44-AS1
hsa-miR-124-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000453671
Biotype: antisense
Gene id: ENSG00000231770
Gene Name: TMEM44-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-424
0.027
1
LINC00698
hsa-miR-124-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465684
Biotype: lincRNA
Gene id: ENSG00000244342
Gene Name: LINC00698
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1393-1406
0.018
1
6mer
1196-1209
0.005
3
6mer
69-87
0.003
0
XLOC_003706
hsa-miR-124-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008264
Biotype: transcript isomorph
Gene id: XLOC_003706
Gene Name: XLOC_003706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1125-1145
0.018
0
7mer
207-228
0.008
0
LOC100128288
hsa-miR-124-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_024447.1
Biotype: lincRNA
Gene id: NR_024447.1 (gene)
Gene Name: LOC100128288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1423-1437
0.014
3
6mer
1938-1960
0.008
5
6mer
1964-1983
0.003
0
6mer
1335-1359
0.001
1
RP11-382J12.1
hsa-miR-124-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519358
Biotype: antisense
Gene id: ENSG00000246366
Gene Name: RP11-382J12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
167-193
0.027
2
GS1-259H13.2
hsa-miR-124-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000431679
Biotype: lincRNA
Gene id: ENSG00000244219
Gene Name: GS1-259H13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1148-1163
0.012
2
7mer
744-767
0.008
3
6mer
330-345
0.004
0
6mer
442-459
0.003
1
FAM224B
hsa-miR-124-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000458667
Biotype: lincRNA
Gene id: ENSG00000230663
Gene Name: FAM224B
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1793-1815
0.018
0
6mer
344-357
0.005
Not Conserved
7mer
1457-1476
0.004
Not Conserved
CTB-171A8.1
hsa-miR-124-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591312
Biotype: antisense
Gene id: ENSG00000266903
Gene Name: CTB-171A8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
400-425
0.027
1
RBM26-AS1
hsa-miR-124-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456602
Biotype: antisense
Gene id: ENSG00000227354
Gene Name: RBM26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-69
0.024
1
6mer
1031-1054
0.002
Not Conserved
RP1-74M1.3
hsa-miR-124-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610135
Biotype: lincRNA
Gene id: ENSG00000272796
Gene Name: RP1-74M1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4733-4757
0.013
7
6mer
66-89
0.006
3
7mer
3774-3788
0.003
3
6mer
3648-3675
0.002
2
6mer
2707-2730
0.001
1
6mer
3873-3881
0.001
1
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