LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
XLOC_013732
hsa-miR-124-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028662
Biotype: transcript isomorph
Gene id: XLOC_013732
Gene Name: XLOC_013732
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1831-1856
0.009
6
7mer
1526-1549
0.008
1
6mer
130-149
0.004
2
6mer
55-68
0.003
0
6mer
205-225
0.003
1
XLOC_008328
hsa-miR-124-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
518-532
0.027
0
LINC01336
hsa-miR-124-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503568
Biotype: lincRNA
Gene id: ENSG00000250889
Gene Name: LINC01336
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-120
0.027
4
RP1-149A16.19
hsa-miR-124-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000625072
Biotype: lincRNA
Gene id: ENSG00000280361
Gene Name: RP1-149A16.19
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-213
0.021
0
6mer
834-860
0.006
0
LOC100506022
hsa-miR-124-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_104622.1
Biotype: lincRNA
Gene id: NR_104622.1 (gene)
Gene Name: LOC100506022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-167
0.027
0
XLOC_000191
hsa-miR-124-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
208-228
0.015
1
7mer
844-856
0.013
0
LOC100506022
hsa-miR-124-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_104623.1
Biotype: lincRNA
Gene id: NR_104623.1 (gene)
Gene Name: LOC100506022
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-167
0.027
0
CTD-2270F17.1
hsa-miR-124-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518387
Biotype: antisense
Gene id: ENSG00000253647
Gene Name: CTD-2270F17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
980-997
0.016
0
7mer
469-487
0.011
0
PCBP1-AS1
hsa-miR-124-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416395
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1763-1788
0.021
0
6mer
1903-1922
0.003
0
7mer
1601-1614
0.003
0
RP3-412A9.17
hsa-miR-124-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5534-5552
0.009
4
6mer
10599-10610
0.004
6
7mer
11726-11747
0.003
0
6mer
14598-14616
0.003
5
6mer
4970-4992
0.003
4
6mer
6950-6972
0.002
1
6mer
14424-14438
0.002
2
6mer
5792-5812
0.001
1
RP11-440I14.2
hsa-miR-124-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515178
Biotype: lincRNA
Gene id: ENSG00000250596
Gene Name: RP11-440I14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
556-575
0.025
2
6mer
1504-1529
0.002
1
RP1-193H18.2
hsa-miR-124-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588041
Biotype: lincRNA
Gene id: ENSG00000267194
Gene Name: RP1-193H18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1834-1847
0.013
5
7mer
53-79
0.011
1
6mer
1390-1410
0.003
3
GS1-259H13.2
hsa-miR-124-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000453227
Biotype: lincRNA
Gene id: ENSG00000244219
Gene Name: GS1-259H13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
926-941
0.012
2
7mer
522-545
0.007
3
6mer
108-123
0.004
0
6mer
220-237
0.003
1
RP3-495K2.1
hsa-miR-124-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000413324
Biotype: lincRNA
Gene id: ENSG00000234519
Gene Name: RP3-495K2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-143
0.027
1
CTD-2619J13.19
hsa-miR-124-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595059
Biotype: lincRNA
Gene id: ENSG00000269473
Gene Name: CTD-2619J13.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-257
0.013
Not Conserved
7mer
3682-3706
0.007
0
6mer
4881-4904
0.004
1
6mer
4965-4987
0.002
1
6mer
3422-3445
0.001
1
ZNF503-AS1
hsa-miR-124-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416398
Biotype: lincRNA
Gene id: ENSG00000226051
Gene Name: ZNF503-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1768-1784
0.018
1
6mer
728-750
0.005
6
6mer
329-349
0.003
3
LINC00501
hsa-miR-124-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000425388
Biotype: lincRNA
Gene id: ENSG00000203645
Gene Name: LINC00501
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1543-1556
0.023
0
6mer
1335-1353
0.004
1
SCARNA15
hsa-miR-124-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000607520
Biotype: retained_intron
Gene id: ENSG00000252690
Gene Name: SCARNA15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3729-3751
0.021
1
6mer
406-428
0.004
2
6mer
1811-1826
0.002
4
RP11-554D20.1
hsa-miR-124-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560864
Biotype: antisense
Gene id: ENSG00000259591
Gene Name: RP11-554D20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
580-597
0.014
4
6mer
103-122
0.007
3
6mer
769-786
0.006
2
TMX2-CTNND1
hsa-miR-124-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4435-4457
0.007
9
7mer
2134-2161
0.004
8
6mer
4935-4946
0.003
5
6mer
183-202
0.003
3
6mer
1380-1397
0.002
5
7mer
4478-4497
0.002
7
6mer
3498-3523
0.002
5
6mer
2029-2049
0.002
6
6mer
2285-2304
0.001
2
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