LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-124-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_006344
hsa-miR-124-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013682
Biotype: transcript isomorph
Gene id: XLOC_006344
Gene Name: XLOC_006344
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
575-600
0.028
0
MAPKAPK5-AS1
hsa-miR-124-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000443596
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-79
0.028
1
STARD7-AS1
hsa-miR-124-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000614453
Biotype: processed_transcript
Gene id: ENSG00000204685
Gene Name: STARD7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-29
0.028
2
IFT74-AS1
hsa-miR-124-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000456198
Biotype: antisense
Gene id: ENSG00000234676
Gene Name: IFT74-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-292
0.028
1
SND1-IT1
hsa-miR-124-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000623342
Biotype: lincRNA
Gene id: ENSG00000279078
Gene Name: SND1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
113-136
0.026
0
6mer
1161-1182
0.001
1
LINC00963
hsa-miR-124-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000419300
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
9375-9388
0.009
4
7mer
6059-6076
0.007
3
6mer
9494-9511
0.007
3
6mer
6210-6235
0.002
1
6mer
4815-4830
0.001
1
6mer
4845-4870
0.001
2
6mer
3054-3070
0.001
0
RP11-15B24.5
hsa-miR-124-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000588368
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-92
0.028
2
LINC01224
hsa-miR-124-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596283
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
409-434
0.012
1
6mer
1845-1861
0.008
1
6mer
1446-1459
0.006
1
6mer
1404-1427
0.001
0
6mer
1370-1396
0.001
0
RP11-482D24.2
hsa-miR-124-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547531
Biotype: antisense
Gene id: ENSG00000257711
Gene Name: RP11-482D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-422
0.028
10
LOC401324
hsa-miR-124-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_038864.1
Biotype: lincRNA
Gene id: NR_038864.1 (gene)
Gene Name: LOC401324
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
391-415
0.014
0
7mer
828-847
0.007
0
6mer
3203-3223
0.003
Not Conserved
7mer
1640-1660
0.003
1
CTA-941F9.10
hsa-miR-124-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21558-21569
0.004
1
7mer
1973-1996
0.004
0
6mer
1211-1232
0.002
0
7mer
12934-12950
0.002
0
6mer
9744-9753
0.002
4
7mer
950-965
0.002
0
6mer
10394-10415
0.002
2
6mer
1659-1676
0.002
Not Conserved
6mer
14277-14289
0.001
1
6mer
15833-15850
0.001
3
6mer
2862-2882
0.001
0
6mer
13524-13546
0.001
1
6mer
4019-4040
0.001
0
6mer
10433-10455
0.001
0
6mer
3636-3652
0.001
0
6mer
19696-19712
0.001
0
XLOC_006931
hsa-miR-124-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014863
Biotype: transcript isomorph
Gene id: XLOC_006931
Gene Name: XLOC_006931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-237
0.017
1
6mer
693-701
0.011
1
NRG3-AS1
hsa-miR-124-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000505481
Biotype: retained_intron
Gene id: ENSG00000225738
Gene Name: NRG3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-514
0.014
1
7mer
459-468
0.013
1
RP11-88H12.2
hsa-miR-124-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602316
Biotype: sense_intronic
Gene id: ENSG00000270059
Gene Name: RP11-88H12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-72
0.020
8
6mer
65-81
0.007
8
RP6-109B7.4
hsa-miR-124-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412643
Biotype: lincRNA
Gene id: ENSG00000235159
Gene Name: RP6-109B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-170
0.015
3
6mer
73-98
0.007
2
6mer
757-781
0.003
1
6mer
475-493
0.002
1
ERVK3-1
hsa-miR-124-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590505
Biotype: retained_intron
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-51
0.027
0
RBM26-AS1
hsa-miR-124-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606584
Biotype: antisense
Gene id: ENSG00000227354
Gene Name: RBM26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-61
0.025
1
6mer
543-566
0.003
Not Conserved
XLOC_013037
hsa-miR-124-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027513
Biotype: transcript isomorph
Gene id: XLOC_013037
Gene Name: XLOC_013037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2086-2090
0.014
12
6mer
311-335
0.003
Not Conserved
6mer
99-123
0.003
1
6mer
1485-1507
0.003
3
6mer
816-829
0.003
4
6mer
897-917
0.001
1
6mer
952-966
0.001
1
AC004449.6
hsa-miR-124-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000564240
Biotype: lincRNA
Gene id: ENSG00000261204
Gene Name: AC004449.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
329-343
0.027
1
LINC01198
hsa-miR-124-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000458282
Biotype: lincRNA
Gene id: ENSG00000231817
Gene Name: LINC01198
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
529-546
0.027
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept