LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-124-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-588H23.3
hsa-miR-124-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546836
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-424
0.016
1
7mer
144-164
0.013
1
RP11-407N17.4
hsa-miR-124-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556537
Biotype: antisense
Gene id: ENSG00000259083
Gene Name: RP11-407N17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-35
0.029
1
XLOC_012981
hsa-miR-124-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2473-2489
0.020
0
7mer
970-991
0.004
0
6mer
612-633
0.004
0
RP11-359B12.2
hsa-miR-124-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503602
Biotype: antisense
Gene id: ENSG00000250132
Gene Name: RP11-359B12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2955-2980
0.022
1
6mer
223-230
0.006
2
XLOC_010774
hsa-miR-124-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022931
Biotype: transcript isomorph
Gene id: XLOC_010774
Gene Name: XLOC_010774
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-199
0.028
3
XLOC_007796
hsa-miR-124-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016430
Biotype: transcript isomorph
Gene id: XLOC_007796
Gene Name: XLOC_007796
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2142-2161
0.022
1
6mer
120-140
0.006
1
RP11-74E22.5
hsa-miR-124-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000610120
Biotype: antisense
Gene id: ENSG00000272770
Gene Name: RP11-74E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
569-594
0.028
9
RP11-46O21.2
hsa-miR-124-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000595410
Biotype: antisense
Gene id: ENSG00000232342
Gene Name: RP11-46O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-580
0.017
0
6mer
323-345
0.006
1
6mer
457-480
0.006
2
RP11-834C11.11
hsa-miR-124-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000564380
Biotype: lincRNA
Gene id: ENSG00000260470
Gene Name: RP11-834C11.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2010-2030
0.009
Not Conserved
6mer
204-222
0.008
5
6mer
219-243
0.006
4
6mer
266-286
0.005
1
THOC7-AS1
hsa-miR-124-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468961
Biotype: antisense
Gene id: ENSG00000240549
Gene Name: THOC7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-148
0.025
2
6mer
427-446
0.003
1
RP11-382J12.1
hsa-miR-124-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518553
Biotype: antisense
Gene id: ENSG00000246366
Gene Name: RP11-382J12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-181
0.028
2
CTD-3037G24.3
hsa-miR-124-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564505
Biotype: antisense
Gene id: ENSG00000259899
Gene Name: CTD-3037G24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
665-681
0.028
1
LINC00907
hsa-miR-124-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585627
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
317-338
0.007
1
7mer
2112-2135
0.007
1
6mer
3189-3206
0.005
2
6mer
3143-3157
0.004
0
6mer
2959-2970
0.003
1
6mer
1957-1976
0.002
0
CTD-2582M21.1
hsa-miR-124-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503685
Biotype: lincRNA
Gene id: ENSG00000251044
Gene Name: CTD-2582M21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-225
0.028
0
XLOC_009185
hsa-miR-124-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019360
Biotype: transcript isomorph
Gene id: XLOC_009185
Gene Name: XLOC_009185
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1980-2003
0.011
0
7mer
446-468
0.007
0
6mer
1305-1324
0.004
2
6mer
2006-2020
0.003
0
6mer
1385-1402
0.003
1
EDNRB-AS1
hsa-miR-124-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000422405
Biotype: lincRNA
Gene id: ENSG00000225579
Gene Name: EDNRB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
561-578
0.021
3
6mer
372-395
0.006
3
CTD-2525I3.6
hsa-miR-124-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594379
Biotype: antisense
Gene id: ENSG00000269535
Gene Name: CTD-2525I3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-231
0.025
0
6mer
431-455
0.003
1
XLOC_003027
hsa-miR-124-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006403
Biotype: transcript isomorph
Gene id: XLOC_003027
Gene Name: XLOC_003027
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-61
0.014
0
6mer
3423-3440
0.003
0
6mer
522-527
0.003
0
6mer
2893-2902
0.003
1
6mer
1385-1401
0.001
0
6mer
2007-2021
0.001
1
6mer
1254-1272
0.001
0
LINC01141
hsa-miR-124-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426428
Biotype: lincRNA
Gene id: ENSG00000236963
Gene Name: LINC01141
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2156-2178
0.008
0
6mer
91-109
0.007
1
7mer
748-769
0.006
3
7mer
1695-1715
0.004
1
6mer
2149-2170
0.001
1
6mer
1059-1081
0.001
Not Conserved
6mer
1458-1472
0.001
Not Conserved
LINC00649
hsa-miR-124-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427447
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7808-7822
0.009
6
6mer
8679-8706
0.003
2
6mer
7170-7186
0.003
3
6mer
3324-3336
0.002
4
6mer
24-39
0.002
Not Conserved
6mer
7572-7590
0.002
0
6mer
3406-3432
0.002
2
6mer
5242-5255
0.002
2
6mer
4581-4606
0.001
1
6mer
1971-1993
0.001
1
6mer
5341-5360
0.001
1
6mer
3447-3459
0.001
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept