LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
MAPKAPK5-AS1
hsa-miR-124-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000456429
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-78
0.027
1
6mer
1161-1184
0.002
1
AC018647.3
hsa-miR-124-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_108082.1
Biotype: lincRNA
Gene id: NR_108082.1 (gene)
Gene Name: AC018647.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1079-1101
0.020
0
6mer
844-871
0.005
1
6mer
882-900
0.004
1
RP3-495K2.1
hsa-miR-124-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000435377
Biotype: lincRNA
Gene id: ENSG00000234519
Gene Name: RP3-495K2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-62
0.029
1
LINC01285
hsa-miR-124-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000412422
Biotype: lincRNA
Gene id: ENSG00000203650
Gene Name: LINC01285
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-581
0.029
1
RP11-403N16.3
hsa-miR-124-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000565707
Biotype: lincRNA
Gene id: ENSG00000260564
Gene Name: RP11-403N16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
555-572
0.029
8
AC073130.1
hsa-miR-124-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420594
Biotype: lincRNA
Gene id: ENSG00000237870
Gene Name: AC073130.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-275
0.015
1
7mer
214-226
0.014
1
CTA-280A3.2
hsa-miR-124-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7289-7307
0.007
1
7mer
8268-8287
0.005
0
7mer
7513-7536
0.005
1
6mer
97-110
0.004
1
6mer
611-638
0.002
1
6mer
6707-6733
0.002
0
6mer
3894-3915
0.002
1
6mer
3008-3022
0.001
1
6mer
3929-3954
0.001
1
CTA-929C8.9
hsa-miR-124-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14556-14578
0.004
1
7mer
21544-21562
0.003
1
6mer
23394-23410
0.002
1
6mer
191-213
0.002
0
6mer
8599-8608
0.002
1
6mer
15329-15349
0.002
1
6mer
10117-10138
0.002
1
6mer
7102-7122
0.002
1
6mer
19067-19091
0.002
3
6mer
9094-9108
0.002
1
6mer
7745-7761
0.001
1
6mer
4544-4569
0.001
0
6mer
5199-5220
0.001
1
6mer
12208-12218
0.001
0
6mer
8672-8687
0.001
1
RP11-747H7.3
hsa-miR-124-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000565058
Biotype: sense_intronic
Gene id: ENSG00000260711
Gene Name: RP11-747H7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3438-3454
0.013
0
7mer
6418-6436
0.007
0
6mer
6316-6330
0.004
1
6mer
6081-6104
0.003
0
6mer
6005-6025
0.002
1
XLOC_006752
hsa-miR-124-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015260
Biotype: transcript isomorph
Gene id: XLOC_006752
Gene Name: XLOC_006752
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-224
0.029
7
RP11-15B24.5
hsa-miR-124-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585511
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-70
0.029
2
AC079466.1
hsa-miR-124-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
712-737
0.009
1
6mer
3592-3615
0.009
1
6mer
4200-4220
0.006
0
6mer
4254-4275
0.005
0
RP4-694B14.8
hsa-miR-124-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611460
Biotype: antisense
Gene id: ENSG00000278383
Gene Name: RP4-694B14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-252
0.029
1
RP11-462G12.2
hsa-miR-124-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571302
Biotype: sense_overlapping
Gene id: ENSG00000262888
Gene Name: RP11-462G12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-103
0.029
0
AC023115.2
hsa-miR-124-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445514
Biotype: lincRNA
Gene id: ENSG00000235885
Gene Name: AC023115.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-364
0.023
1
6mer
109-118
0.006
4
RP11-351I21.11
hsa-miR-124-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602981
Biotype: lincRNA
Gene id: ENSG00000270074
Gene Name: RP11-351I21.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
839-858
0.021
0
6mer
1250-1266
0.008
0
PTPRG-AS1
hsa-miR-124-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490916
Biotype: antisense
Gene id: ENSG00000241472
Gene Name: PTPRG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-174
0.029
5
ARHGAP5-AS1
hsa-miR-124-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553596
Biotype: antisense
Gene id: ENSG00000258655
Gene Name: ARHGAP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1035-1054
0.016
0
7mer
1606-1626
0.008
Not Conserved
6mer
900-916
0.003
5
6mer
837-855
0.001
0
RP5-1073O3.2
hsa-miR-124-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429398
Biotype: antisense
Gene id: ENSG00000231128
Gene Name: RP5-1073O3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-480
0.029
1
CTD-3118D7.1
hsa-miR-124-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558671
Biotype: sense_intronic
Gene id: ENSG00000259690
Gene Name: CTD-3118D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2926-2952
0.012
1
7mer
2362-2381
0.006
1
6mer
397-414
0.005
1
6mer
314-334
0.004
1
6mer
2179-2192
0.002
2
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