LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
HOXA-AS2
hsa-miR-124-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000521687
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-293
0.030
8
RP11-15B24.5
hsa-miR-124-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000591117
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-93
0.030
2
RP11-100F15.2
hsa-miR-124-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546791
Biotype: lincRNA
Gene id: ENSG00000257997
Gene Name: RP11-100F15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-162
0.030
1
XLOC_008063
hsa-miR-124-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017243
Biotype: transcript isomorph
Gene id: XLOC_008063
Gene Name: XLOC_008063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-41
0.017
0
6mer
4720-4740
0.006
1
6mer
3917-3935
0.004
4
6mer
1038-1051
0.003
1
RP11-15B24.5
hsa-miR-124-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590667
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-93
0.030
2
RP11-15B24.5
hsa-miR-124-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000588492
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-93
0.030
2
RP4-639J15.3
hsa-miR-124-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000594086
Biotype: lincRNA
Gene id: ENSG00000269446
Gene Name: RP4-639J15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1014-1036
0.028
0
6mer
428-444
0.002
Not Conserved
RP5-882C2.2
hsa-miR-124-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000563394
Biotype: antisense
Gene id: ENSG00000260793
Gene Name: RP5-882C2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1476-1486
0.030
0
XLOC_008826
hsa-miR-124-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
80-93
0.010
0
6mer
4316-4330
0.006
0
6mer
4368-4392
0.006
0
6mer
313-334
0.005
0
6mer
3360-3384
0.003
0
XLOC_001882
hsa-miR-124-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004043
Biotype: transcript isomorph
Gene id: XLOC_001882
Gene Name: XLOC_001882
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
512-531
0.018
4
7mer
699-724
0.012
2
RP11-77K12.9
hsa-miR-124-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621929
Biotype: lincRNA
Gene id: ENSG00000274220
Gene Name: RP11-77K12.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-200
0.022
0
6mer
1983-1995
0.004
1
6mer
1011-1026
0.003
2
DLEU1
hsa-miR-124-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_109974.1
Biotype: sense
Gene id: NR_109974.1 (gene)
Gene Name: DLEU1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1320-1331
0.024
2
6mer
1036-1056
0.003
3
6mer
575-586
0.002
1
AC004448.2
hsa-miR-124-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000437646
Biotype: lincRNA
Gene id: ENSG00000227078
Gene Name: AC004448.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-317
0.026
3
6mer
133-151
0.004
1
KCNA3
hsa-miR-124-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566942
Biotype: lincRNA
Gene id: ENSG00000259834
Gene Name: KCNA3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3117-3139
0.020
5
6mer
744-763
0.006
4
6mer
3192-3206
0.004
1
AC130469.2
hsa-miR-124-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597256
Biotype: antisense
Gene id: ENSG00000267986
Gene Name: AC130469.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-128
0.030
0
RP1-69M21.2
hsa-miR-124-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453135
Biotype: lincRNA
Gene id: ENSG00000235643
Gene Name: RP1-69M21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-177
0.012
0
8mer
1180-1200
0.012
0
6mer
1194-1214
0.005
1
XLOC_005143
hsa-miR-124-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011660
Biotype: transcript isomorph
Gene id: XLOC_005143
Gene Name: XLOC_005143
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1394-1420
0.024
0
6mer
161-185
0.006
1
RP11-363N22.3
hsa-miR-124-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000381466
Biotype: antisense
Gene id: ENSG00000205740
Gene Name: RP11-363N22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
516-532
0.014
0
7mer
1603-1618
0.013
Not Conserved
6mer
187-213
0.003
0
LINC00561
hsa-miR-124-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000565815
Biotype: lincRNA
Gene id: ENSG00000261206
Gene Name: LINC00561
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2217-2233
0.018
3
7mer
2388-2414
0.011
0
LINC00174
hsa-miR-124-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000421767
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-108
0.008
0
6mer
204-229
0.004
0
7mer
2262-2278
0.003
0
6mer
3887-3907
0.003
1
6mer
444-468
0.003
0
7mer
2885-2901
0.003
0
6mer
3682-3703
0.002
0
6mer
2429-2454
0.002
0
6mer
2046-2071
0.002
1
6mer
1819-1834
0.001
Not Conserved
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