LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
LINC00894
hsa-miR-124-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000444489
Biotype: antisense
Gene id: ENSG00000235703
Gene Name: LINC00894
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2919-2941
0.028
2
6mer
1751-1767
0.001
Not Conserved
6mer
921-939
0.001
0
XLOC_006903
hsa-miR-124-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014834
Biotype: transcript isomorph
Gene id: XLOC_006903
Gene Name: XLOC_006903
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-298
0.027
1
6mer
1714-1728
0.005
1
RP11-218M22.1
hsa-miR-124-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537514
Biotype: antisense
Gene id: ENSG00000177406
Gene Name: RP11-218M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1865-1889
0.013
1
7mer
68-88
0.012
0
6mer
380-396
0.004
1
6mer
1655-1675
0.003
0
CECR3
hsa-miR-124-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428828
Biotype: lincRNA
Gene id: ENSG00000241832
Gene Name: CECR3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1357-1379
0.023
7
6mer
476-501
0.006
5
6mer
1221-1241
0.002
0
6mer
1211-1230
0.001
1
RP11-15B24.5
hsa-miR-124-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586399
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-70
0.031
2
RP11-65J3.2
hsa-miR-124-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439014
Biotype: lincRNA
Gene id: ENSG00000226355
Gene Name: RP11-65J3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
583-600
0.026
Not Conserved
6mer
39-62
0.005
1
MIR217HG
hsa-miR-124-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446139
Biotype: lincRNA
Gene id: ENSG00000226702
Gene Name: MIR217HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-744
0.016
1
6mer
80-89
0.008
4
6mer
680-701
0.007
4
CTC-241F20.4
hsa-miR-124-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600941
Biotype: lincRNA
Gene id: ENSG00000268186
Gene Name: CTC-241F20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-79
0.031
1
RP11-411K7.1
hsa-miR-124-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431554
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2685-2700
0.020
0
7mer
1914-1940
0.006
0
6mer
70-96
0.004
0
RP11-15B24.5
hsa-miR-124-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590791
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-70
0.031
2
RP11-1275H24.2
hsa-miR-124-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609130
Biotype: lincRNA
Gene id: ENSG00000272953
Gene Name: RP11-1275H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-150
0.028
3
6mer
243-265
0.003
1
RP11-15B24.5
hsa-miR-124-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586214
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-93
0.025
2
6mer
592-608
0.006
3
XLOC_001199
hsa-miR-124-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001815
Biotype: transcript isomorph
Gene id: XLOC_001199
Gene Name: XLOC_001199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-215
0.029
6
6mer
1036-1050
0.002
1
XLOC_012879
hsa-miR-124-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026558
Biotype: transcript isomorph
Gene id: XLOC_012879
Gene Name: XLOC_012879
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-250
0.028
1
6mer
927-952
0.003
0
RP11-15B24.5
hsa-miR-124-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457558
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-145
0.031
2
LINC00174
hsa-miR-124-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026873.1
Biotype: antisense
Gene id: NR_026873.1 (gene)
Gene Name: LINC00174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-108
0.008
0
6mer
204-229
0.004
0
6mer
3887-3907
0.003
1
7mer
2262-2278
0.003
0
6mer
444-468
0.003
0
7mer
2885-2901
0.003
0
6mer
3682-3703
0.003
0
6mer
2046-2071
0.002
1
6mer
2429-2454
0.002
0
6mer
1819-1834
0.001
Not Conserved
RP11-634B7.5
hsa-miR-124-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426444
Biotype: lincRNA
Gene id: ENSG00000239395
Gene Name: RP11-634B7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-127
0.030
0
XLOC_003498
hsa-miR-124-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008035
Biotype: transcript isomorph
Gene id: XLOC_003498
Gene Name: XLOC_003498
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-263
0.030
1
XLOC_010588
hsa-miR-124-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021986
Biotype: transcript isomorph
Gene id: XLOC_010588
Gene Name: XLOC_010588
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1168-1185
0.021
1
7mer
1937-1954
0.005
1
6mer
2027-2054
0.002
1
6mer
1055-1068
0.002
2
RP11-797H7.5
hsa-miR-124-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000340779
Biotype: antisense
Gene id: ENSG00000189316
Gene Name: RP11-797H7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-339
0.030
1
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