LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
AC068196.1
hsa-miR-124-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456895
Biotype: lincRNA
Gene id: ENSG00000238171
Gene Name: AC068196.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
792-804
0.032
4
XLOC_010279
hsa-miR-124-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-199
0.032
0
MIR4435-1HG
hsa-miR-124-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603827
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
31-50
0.021
2
6mer
529-549
0.007
4
6mer
1472-1481
0.004
0
RP11-15B24.5
hsa-miR-124-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585454
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-93
0.032
2
RP11-216M21.7
hsa-miR-124-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2736-2746
0.014
0
6mer
452-466
0.011
0
6mer
2060-2078
0.007
0
XLOC_006934
hsa-miR-124-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014865
Biotype: transcript isomorph
Gene id: XLOC_006934
Gene Name: XLOC_006934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3477-3501
0.015
1
7mer
3170-3194
0.011
2
6mer
3583-3609
0.002
0
6mer
2578-2602
0.002
2
6mer
2244-2263
0.001
1
6mer
2679-2700
0.001
Not Conserved
XLOC_002123
hsa-miR-124-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002666
Biotype: transcript isomorph
Gene id: XLOC_002123
Gene Name: XLOC_002123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-162
0.020
2
7mer
1233-1244
0.008
1
6mer
73-87
0.005
1
XLOC_000283
hsa-miR-124-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001018
Biotype: transcript isomorph
Gene id: XLOC_000283
Gene Name: XLOC_000283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
721-745
0.032
1
XXyac-YX155B6.5
hsa-miR-124-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000594699
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-360
0.032
1
RP11-15B24.5
hsa-miR-124-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590250
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-93
0.027
2
6mer
573-589
0.005
3
LINC00309
hsa-miR-124-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431020
Biotype: lincRNA
Gene id: ENSG00000230923
Gene Name: LINC00309
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-165
0.020
2
7mer
1236-1247
0.008
1
6mer
76-90
0.005
1
XLOC_006828
hsa-miR-124-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014743
Biotype: transcript isomorph
Gene id: XLOC_006828
Gene Name: XLOC_006828
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-247
0.020
2
6mer
1840-1858
0.009
2
6mer
985-1005
0.003
0
LINC00506
hsa-miR-124-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047469.1
Biotype: lincRNA
Gene id: NR_047469.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4078-4090
0.014
2
9mer
2652-2678
0.005
Not Conserved
6mer
1070-1086
0.004
0
6mer
865-877
0.003
0
6mer
3398-3411
0.002
0
6mer
1660-1672
0.002
0
6mer
2382-2394
0.001
0
XLOC_008380
hsa-miR-124-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018119
Biotype: transcript isomorph
Gene id: XLOC_008380
Gene Name: XLOC_008380
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-86
0.029
6
6mer
164-180
0.003
0
RP11-575H3.1
hsa-miR-124-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567067
Biotype: lincRNA
Gene id: ENSG00000261600
Gene Name: RP11-575H3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
292-313
0.032
5
AC068057.1
hsa-miR-124-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453322
Biotype: lincRNA
Gene id: ENSG00000228528
Gene Name: AC068057.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
494-521
0.031
5
RP11-30L3.2
hsa-miR-124-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577641
Biotype: antisense
Gene id: ENSG00000266696
Gene Name: RP11-30L3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
431-450
0.031
4
RP11-678G14.4
hsa-miR-124-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594927
Biotype: lincRNA
Gene id: ENSG00000268240
Gene Name: RP11-678G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
404-419
0.014
0
7mer
490-506
0.012
0
7mer
60-78
0.005
Not Conserved
XLOC_009333
hsa-miR-124-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019540
Biotype: transcript isomorph
Gene id: XLOC_009333
Gene Name: XLOC_009333
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-134
0.031
1
FAM170B-AS1
hsa-miR-124-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000442525
Biotype: antisense
Gene id: ENSG00000234736
Gene Name: FAM170B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-60
0.020
0
6mer
261-276
0.006
2
7mer
1751-1774
0.006
0
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