LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
CTD-2015H3.1
hsa-miR-124-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583827
Biotype: lincRNA
Gene id: ENSG00000264080
Gene Name: CTD-2015H3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-46
0.027
0
6mer
324-349
0.006
2
TSNAX-DISC1
hsa-miR-124-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028396.1
Biotype: sense
Gene id: NR_028396.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2765-2784
0.020
0
7mer
1322-1337
0.005
1
6mer
3170-3192
0.004
4
7mer
2837-2858
0.003
0
6mer
1945-1968
0.001
2
TSNAX-DISC1
hsa-miR-124-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028397.1
Biotype: sense
Gene id: NR_028397.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2630-2649
0.020
0
7mer
1187-1202
0.005
1
6mer
3035-3057
0.004
4
7mer
2702-2723
0.003
0
6mer
1810-1833
0.001
2
ZBTB20-AS3
hsa-miR-124-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498630
Biotype: lincRNA
Gene id: ENSG00000239946
Gene Name: ZBTB20-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
428-442
0.033
2
MIR124-2HG
hsa-miR-124-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520799
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
916-934
0.033
0
AF127936.7
hsa-miR-124-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432230
Biotype: lincRNA
Gene id: ENSG00000235609
Gene Name: AF127936.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5430-5448
0.015
4
6mer
154-167
0.009
4
7mer
4823-4840
0.005
2
7mer
1888-1910
0.003
0
6mer
4134-4147
0.001
0
XIST
hsa-miR-124-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13540-13555
0.010
3
6mer
18836-18856
0.008
5
7mer
7222-7236
0.004
2
6mer
2680-2705
0.002
4
6mer
15422-15438
0.002
Not Conserved
6mer
15646-15667
0.002
1
6mer
17062-17083
0.002
3
6mer
11300-11325
0.001
0
6mer
978-989
0.001
0
6mer
1770-1787
0.001
1
RP11-1038A11.3
hsa-miR-124-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537192
Biotype: lincRNA
Gene id: ENSG00000256417
Gene Name: RP11-1038A11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
824-846
0.033
6
GS1-124K5.3
hsa-miR-124-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450353
Biotype: lincRNA
Gene id: ENSG00000223473
Gene Name: GS1-124K5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-151
0.033
1
AC107399.2
hsa-miR-124-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000416680
Biotype: lincRNA
Gene id: ENSG00000224932
Gene Name: AC107399.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
594-606
0.017
1
7mer
324-349
0.016
1
RP11-44F14.2
hsa-miR-124-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566383
Biotype: lincRNA
Gene id: ENSG00000261804
Gene Name: RP11-44F14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
389-415
0.033
1
TSNAX-DISC1
hsa-miR-124-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028394.1
Biotype: sense
Gene id: NR_028394.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2893-2912
0.020
0
6mer
3298-3320
0.004
4
7mer
1450-1465
0.004
1
7mer
2965-2986
0.003
0
6mer
2073-2096
0.001
2
RP11-383M4.2
hsa-miR-124-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427387
Biotype: lincRNA
Gene id: ENSG00000230846
Gene Name: RP11-383M4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-43
0.023
1
6mer
281-300
0.005
1
6mer
132-155
0.005
0
TSNAX-DISC1
hsa-miR-124-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028395.1
Biotype: sense
Gene id: NR_028395.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2790-2809
0.020
0
6mer
3195-3217
0.004
4
7mer
1450-1465
0.004
1
7mer
2862-2883
0.003
0
6mer
2073-2096
0.001
2
XLOC_010445
hsa-miR-124-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021851
Biotype: transcript isomorph
Gene id: XLOC_010445
Gene Name: XLOC_010445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-69
0.024
1
6mer
5073-5096
0.004
1
7mer
3476-3497
0.003
1
6mer
1075-1098
0.002
Not Conserved
XLOC_008274
hsa-miR-124-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1072-1091
0.015
1
6mer
5355-5368
0.006
0
6mer
218-242
0.004
1
7mer
2749-2775
0.003
0
6mer
2635-2660
0.002
1
6mer
3710-3721
0.002
1
6mer
3539-3557
0.001
0
XLOC_011157
hsa-miR-124-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023287
Biotype: transcript isomorph
Gene id: XLOC_011157
Gene Name: XLOC_011157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
913-931
0.008
0
6mer
2758-2779
0.005
0
7mer
939-952
0.004
0
6mer
533-546
0.004
0
6mer
1145-1166
0.003
0
6mer
1294-1320
0.002
0
6mer
986-1001
0.002
0
6mer
1317-1339
0.001
0
6mer
1568-1593
0.001
0
6mer
2102-2118
0.001
Not Conserved
6mer
2298-2317
0.001
Not Conserved
6mer
2244-2270
0.001
Not Conserved
6mer
1514-1530
0.001
Not Conserved
6mer
2357-2374
0.001
Not Conserved
AC093642.3
hsa-miR-124-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429456
Biotype: lincRNA
Gene id: ENSG00000237940
Gene Name: AC093642.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-47
0.029
0
6mer
979-1000
0.003
0
DNM3OS
hsa-miR-124-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103486.1
Biotype: antisense
Gene id: NR_103486.1 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-472
0.023
2
6mer
318-342
0.004
1
6mer
2873-2893
0.002
1
6mer
2706-2719
0.002
1
6mer
2864-2880
0.001
1
RP11-760D2.1
hsa-miR-124-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436042
Biotype: lincRNA
Gene id: ENSG00000225488
Gene Name: RP11-760D2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
516-524
0.017
1
6mer
135-150
0.008
0
6mer
21-45
0.006
0
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