LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009627
hsa-miR-124-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020282
Biotype: transcript isomorph
Gene id: XLOC_009627
Gene Name: XLOC_009627
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
702-724
0.034
6
ARHGAP5-AS1
hsa-miR-124-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_027263.1
Biotype: antisense
Gene id: NR_027263.1 (gene)
Gene Name: ARHGAP5-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
562-581
0.018
0
7mer
1133-1153
0.008
Not Conserved
6mer
427-443
0.005
5
6mer
364-382
0.002
0
NEAT1
hsa-miR-124-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2922-2947
0.021
1
7mer
3247-3269
0.007
1
6mer
1629-1649
0.003
4
7mer
1769-1790
0.003
1
6mer
1685-1710
0.001
0
RP11-268G12.3
hsa-miR-124-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000436019
Biotype: lincRNA
Gene id: ENSG00000242021
Gene Name: RP11-268G12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-264
0.022
1
7mer
491-512
0.012
1
LINC01355
hsa-miR-124-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000604481
Biotype: lincRNA
Gene id: ENSG00000261326
Gene Name: LINC01355
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-190
0.034
3
CTD-2012K14.6
hsa-miR-124-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565929
Biotype: lincRNA
Gene id: ENSG00000261386
Gene Name: CTD-2012K14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-179
0.023
0
6mer
176-192
0.011
6
PCBP1-AS1
hsa-miR-124-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594376
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
599-618
0.030
1
6mer
688-701
0.003
1
XLOC_011693
hsa-miR-124-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1864-1884
0.019
0
6mer
1216-1231
0.011
0
6mer
666-682
0.003
Not Conserved
XLOC_009474
hsa-miR-124-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4855-4867
0.011
8
7mer
6142-6154
0.009
8
7mer
1256-1272
0.006
2
6mer
3790-3815
0.005
8
6mer
2354-2372
0.003
9
XLOC_003222
hsa-miR-124-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006618
Biotype: transcript isomorph
Gene id: XLOC_003222
Gene Name: XLOC_003222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
915-939
0.020
1
6mer
798-823
0.008
3
6mer
289-308
0.003
1
6mer
608-624
0.002
0
LOC101927446
hsa-miR-124-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110085.1
Biotype: sense
Gene id: NR_110085.1 (gene)
Gene Name: LOC101927446
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1513-1523
0.020
1
6mer
44-66
0.005
Not Conserved
7mer
156-170
0.004
Not Conserved
6mer
291-301
0.003
0
6mer
1033-1045
0.002
1
XLOC_011185
hsa-miR-124-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023184
Biotype: transcript isomorph
Gene id: XLOC_011185
Gene Name: XLOC_011185
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4305-4320
0.012
0
7mer
692-716
0.012
2
6mer
70-91
0.007
1
6mer
1959-1975
0.002
1
SOS1-IT1
hsa-miR-124-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594472
Biotype: sense_intronic
Gene id: ENSG00000229692
Gene Name: SOS1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1011-1026
0.023
6
7mer
724-747
0.010
1
LINC01002
hsa-miR-124-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620229
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
443-465
0.033
1
RP11-789A21.1
hsa-miR-124-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556016
Biotype: lincRNA
Gene id: ENSG00000259044
Gene Name: RP11-789A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-356
0.033
1
IPW
hsa-miR-124-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_023915.1
Biotype: lincRNA
Gene id: NR_023915.1 (gene)
Gene Name: IPW
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4305-4320
0.012
0
7mer
692-716
0.012
2
6mer
70-91
0.007
1
6mer
1959-1975
0.002
1
RP11-434I12.2
hsa-miR-124-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514599
Biotype: antisense
Gene id: ENSG00000250295
Gene Name: RP11-434I12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-70
0.026
5
6mer
2560-2577
0.005
5
6mer
2040-2059
0.002
Not Conserved
RP11-44F14.2
hsa-miR-124-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565189
Biotype: lincRNA
Gene id: ENSG00000261804
Gene Name: RP11-44F14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-66
0.033
1
AC012314.20
hsa-miR-124-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000426213
Biotype: lincRNA
Gene id: ENSG00000223660
Gene Name: AC012314.20
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-164
0.033
1
RP11-15B24.5
hsa-miR-124-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000591257
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-93
0.033
2
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