LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
SOX9-AS1
hsa-miR-107
0.884
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000443037
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-90
0.011
1
7mer
330-341
0.010
2
7mer
333-342
0.010
3
7mer
76-90
0.009
1
6mer
189-210
0.004
1
CTD-2516F10.2
hsa-miR-107
0.884
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530846
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-48
0.044
4
CTC-459F4.3
hsa-miR-107
0.883
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588318
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-256
0.025
0
7mer
237-259
0.018
0
LINC01410
hsa-miR-107
0.883
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2213-2229
0.012
0
7mer
2167-2177
0.011
0
6mer
2122-2140
0.008
0
6mer
2167-2179
0.008
0
6mer
2418-2443
0.004
Not Conserved
6mer
984-1005
0.001
Not Conserved
LL22NC03-86G7.1
hsa-miR-107
0.882
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
19889-19913
0.005
14
7mer
30176-30195
0.003
1
6mer
359-375
0.003
1
6mer
37614-37639
0.002
Not Conserved
6mer
5293-5314
0.002
0
6mer
1105-1118
0.002
1
6mer
428-446
0.002
2
6mer
6225-6243
0.002
4
6mer
5911-5936
0.001
1
7mer
2863-2876
0.001
1
6mer
33131-33152
0.001
4
6mer
17525-17537
0.001
3
6mer
24387-24413
0.001
7
6mer
32187-32205
0.001
2
6mer
34290-34312
0.001
0
7mer
23935-23955
0.001
0
6mer
764-791
0.001
1
6mer
15049-15076
0.001
0
6mer
18073-18087
0.001
1
6mer
17861-17874
0.001
0
6mer
23848-23863
0.001
0
6mer
18405-18424
0.001
0
6mer
26653-26673
0.001
1
6mer
6048-6068
0.001
4
6mer
10135-10153
0.001
1
6mer
6878-6893
0.001
1
6mer
770-793
0.001
1
6mer
25428-25444
0.001
1
6mer
13152-13171
0.001
3
6mer
3976-3997
0.001
0
6mer
24504-24524
0.001
4
6mer
13046-13069
0.000
Not Conserved
6mer
26653-26675
0.000
1
RP11-180P8.3
hsa-miR-107
0.881
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581596
Biotype: lincRNA
Gene id: ENSG00000266411
Gene Name: RP11-180P8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-303
0.043
7
RP11-351I21.11
hsa-miR-107
0.881
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602981
Biotype: lincRNA
Gene id: ENSG00000270074
Gene Name: RP11-351I21.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1238-1262
0.043
0
LINC01125
hsa-miR-107
0.881
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598737
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-75
0.043
0
RP11-659P15.1
hsa-miR-107
0.881
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526131
Biotype: lincRNA
Gene id: ENSG00000255146
Gene Name: RP11-659P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
253-278
0.032
2
7mer
1649-1667
0.008
1
6mer
1652-1667
0.003
2
XLOC_007952
hsa-miR-107
0.880
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017415
Biotype: transcript isomorph
Gene id: XLOC_007952
Gene Name: XLOC_007952
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-462
0.031
0
7mer
100-126
0.012
3
AC006262.4
hsa-miR-107
0.880
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599127
Biotype: lincRNA
Gene id: ENSG00000269729
Gene Name: AC006262.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-35
0.021
0
7mer
354-380
0.015
0
6mer
176-200
0.007
0
RP11-432I5.6
hsa-miR-107
0.879
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567077
Biotype: antisense
Gene id: ENSG00000260185
Gene Name: RP11-432I5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-385
0.037
2
6mer
321-340
0.006
2
XLOC_012004
hsa-miR-107
0.879
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025047
Biotype: transcript isomorph
Gene id: XLOC_012004
Gene Name: XLOC_012004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2584-2605
0.032
4
6mer
2865-2883
0.007
5
6mer
1737-1752
0.004
10
CTA-732E4.1
hsa-miR-107
0.879
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624817
Biotype: antisense
Gene id: ENSG00000280258
Gene Name: CTA-732E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-76
0.043
1
RP3-508I15.20
hsa-miR-107
0.878
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609428
Biotype: sense_intronic
Gene id: ENSG00000273096
Gene Name: RP3-508I15.20
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-179
0.043
1
IQCF5-AS1
hsa-miR-107
0.878
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000440723
Biotype: antisense
Gene id: ENSG00000235455
Gene Name: IQCF5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1960-1975
0.036
1
6mer
281-306
0.004
2
6mer
281-293
0.003
1
RP13-494C23.1
hsa-miR-107
0.878
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503085
Biotype: lincRNA
Gene id: ENSG00000251009
Gene Name: RP13-494C23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-86
0.043
1
LINC01125
hsa-miR-107
0.877
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599435
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-75
0.043
0
RP11-344E13.3
hsa-miR-107
0.877
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000443508
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-304
0.026
1
7mer
85-109
0.016
1
LINC01376
hsa-miR-107
0.877
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424895
Biotype: lincRNA
Gene id: ENSG00000236204
Gene Name: LINC01376
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1637-1658
0.035
8
7mer
868-885
0.007
Not Conserved
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