LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
MIA-RAB4B
hsa-miR-107
0.668
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: NR_037775.1
Biotype: sense
Gene id: NR_037775.1 (gene)
Gene Name: MIA-RAB4B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:40796724-40796755
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:40796724-40796755
exon
HITS-CLIP
DIRECT
LncBasev2
MIR124-2HG
hsa-miR-107
0.378
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000521441
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:64383219-64383247
exon
HITS-CLIP
DIRECT
LncBasev2
8:64381830-64381858
exon
HITS-CLIP
DIRECT
LncBasev2
MIR181A1HG
hsa-miR-107
0.458
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000436880
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:198899767-198899795
exon
HITS-CLIP
DIRECT
LncBasev2
MIR4500HG
hsa-miR-107
0.519
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000441617
Biotype: lincRNA
Gene id: ENSG00000228824
Gene Name: MIR4500HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:87671109-87671137
exon
HITS-CLIP
DIRECT
LncBasev2
MIR4534
hsa-miR-107
0.987
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
22:37986739-37986767
exon
HITS-CLIP
DIRECT
LncBasev2
MIR6723
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000414273
Biotype: unprocessed_pseudogene
Gene id: ENSG00000237973
Gene Name: MIR6723
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
1:632057-632085
exon
HITS-CLIP
DIRECT
LncBasev2
MRPL20P1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 21
Transcript: ENST00000400819
Biotype: processed_pseudogene
Gene id: ENSG00000215734
Gene Name: MRPL20P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
21:36994828-36994856
exon
HITS-CLIP
DIRECT
LncBasev2
MRPL3P1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000400109
Biotype: processed_pseudogene
Gene id: ENSG00000215349
Gene Name: MRPL3P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305048-19305076
exon
PAR-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305048-19305076
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305048-19305076
exon
HITS-CLIP
DIRECT
LncBasev2
Skalsky Rebecca L. et al. 2012
EF3DAGO2
IP
Tested Cell Line: EF3DAGO2
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305048-19305076
exon
PAR-CLIP
DIRECT
LncBasev2
13:19305048-19305076
exon
PAR-CLIP
DIRECT
LncBasev2
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:19305048-19305076
exon
PAR-CLIP
DIRECT
LncBasev2
MRPS31P5
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000416599
Biotype: processed_transcript
Gene id: ENSG00000243406
Gene Name: MRPS31P5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:52190041-52190069
exon
HITS-CLIP
DIRECT
LncBasev2
13:52190041-52190072
exon
HITS-CLIP
DIRECT
LncBasev2
MT1P3
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000421424
Biotype: processed_pseudogene
Gene id: ENSG00000229230
Gene Name: MT1P3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:35218083-35218111
exon
HITS-CLIP
DIRECT
LncBasev2
MT1XP1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000421314
Biotype: processed_pseudogene
Gene id: ENSG00000233929
Gene Name: MT1XP1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:16241296-16241324
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:16241287-16241324
exon
HITS-CLIP
DIRECT
LncBasev2
MT2P1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000262499
Biotype: processed_pseudogene
Gene id: ENSG00000162840
Gene Name: MT2P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Umbilical vein
HUVEC
IP
Tested Cell Line: HUVEC
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:68376397-68376425
exon
HITS-CLIP
DIRECT
LncBasev2
4:68376397-68376425
exon
HITS-CLIP
DIRECT
LncBasev2
4:68376397-68376425
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:68376397-68376425
exon
HITS-CLIP
DIRECT
LncBasev2
NCBP2-AS2
hsa-miR-107
0.731
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000602845
Biotype: lincRNA
Gene id: ENSG00000270170
Gene Name: NCBP2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:196943317-196943345
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-107
0.733
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:65442207-65442238
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427835-65427863
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443270-65443298
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424304-65424332
exon
HITS-CLIP
DIRECT
LncBasev2
11:65441159-65441187
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443270-65443298
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435667-65435695
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444028-65444059
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443751-65443779
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424304-65424332
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427835-65427863
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442207-65442238
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444028-65444059
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443270-65443298
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435667-65435695
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427835-65427863
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424304-65424332
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443270-65443298
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442207-65442238
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442207-65442235
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443751-65443779
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444028-65444059
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442207-65442235
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435667-65435695
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65444028-65444056
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424304-65424332
exon
HITS-CLIP
DIRECT
LncBasev2
11:65431299-65431327
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435512-65435540
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443751-65443779
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435667-65435695
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65442207-65442238
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424304-65424332
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444028-65444059
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443270-65443298
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442207-65442238
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436536-65436564
exon
HITS-CLIP
DIRECT
LncBasev2
11:65438816-65438844
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442207-65442238
exon
HITS-CLIP
DIRECT
LncBasev2
11:65431299-65431327
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443751-65443779
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427835-65427863
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444028-65444059
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443270-65443298
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65443270-65443298
exon
HITS-CLIP
DIRECT
LncBasev2
11:65442207-65442238
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65438816-65438844
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65442207-65442238
exon
HITS-CLIP
DIRECT
LncBasev2
11:65441159-65441187
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435667-65435695
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443751-65443779
exon
HITS-CLIP
DIRECT
LncBasev2
11:65438816-65438844
exon
HITS-CLIP
DIRECT
LncBasev2
11:65435512-65435540
exon
HITS-CLIP
DIRECT
LncBasev2
11:65444028-65444059
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
11:65443270-65443298
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427835-65427863
exon
HITS-CLIP
DIRECT
LncBasev2
11:65431299-65431327
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436536-65436564
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-107
0.503
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65424304-65424332
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424304-65424332
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424304-65424332
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
11:65424304-65424332
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65423557-65423585
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65424304-65424332
exon
HITS-CLIP
DIRECT
LncBasev2
NPM1P26
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000426339
Biotype: processed_pseudogene
Gene id: ENSG00000235677
Gene Name: NPM1P26
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:96560632-96560660
exon
HITS-CLIP
DIRECT
LncBasev2
NPM1P27
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000502784
Biotype: processed_pseudogene
Gene id: ENSG00000249353
Gene Name: NPM1P27
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:93683239-93683267
exon
HITS-CLIP
DIRECT
LncBasev2
NS3BP
hsa-miR-107
0.457
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_046316.1
Biotype: lincRNA
Gene id: NR_046316.1 (gene)
Gene Name: NS3BP
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:779806-779834
exon
HITS-CLIP
DIRECT
LncBasev2
OIP5-AS1
hsa-miR-107
0.392
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:41304639-41304667
exon
HITS-CLIP
DIRECT
LncBasev2
P2RX5-TAX1BP3
hsa-miR-107
0.428
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: NR_037928.1
Biotype: sense
Gene id: NR_037928.1 (gene)
Gene Name: P2RX5-TAX1BP3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Umbilical vein
HUVEC
IP
Tested Cell Line: HUVEC
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:3663466-3663494
exon
HITS-CLIP
DIRECT
LncBasev2
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