LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
AC092171.4
hsa-miR-107
0.930
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000444210
Biotype: lincRNA
Gene id: ENSG00000230733
Gene Name: AC092171.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2420-2436
0.024
7
8mer
2658-2685
0.021
2
7mer
2352-2371
0.007
Not Conserved
6mer
1690-1712
0.001
1
6mer
1478-1501
0.001
1
PCAT19
hsa-miR-107
0.930
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599801
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-557
0.029
0
6mer
661-673
0.016
1
6mer
479-498
0.007
0
AC010975.1
hsa-miR-107
0.930
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443301
Biotype: antisense
Gene id: ENSG00000229385
Gene Name: AC010975.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-590
0.053
3
RP11-80B9.4
hsa-miR-107
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431139
Biotype: lincRNA
Gene id: ENSG00000230015
Gene Name: RP11-80B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-412
0.053
1
PCAT19
hsa-miR-107
0.929
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595063
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-447
0.029
0
6mer
551-563
0.017
1
6mer
369-388
0.007
0
CTC-529P8.1
hsa-miR-107
0.926
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507318
Biotype: lincRNA
Gene id: ENSG00000250072
Gene Name: CTC-529P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2973-2995
0.050
2
6mer
107-117
0.002
0
RP11-379B18.5
hsa-miR-107
0.926
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600280
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-236
0.052
3
LINC01125
hsa-miR-107
0.926
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599501
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-75
0.043
0
7mer
501-522
0.009
5
RP1-302G2.5
hsa-miR-107
0.926
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000576476
Biotype: lincRNA
Gene id: ENSG00000262179
Gene Name: RP1-302G2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-110
0.015
9
6mer
87-112
0.009
9
7mer
64-83
0.008
3
6mer
141-154
0.008
8
6mer
64-80
0.005
3
7mer
74-95
0.005
1
6mer
93-119
0.002
2
RP11-262I2.2
hsa-miR-107
0.925
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427247
Biotype: lincRNA
Gene id: ENSG00000224222
Gene Name: RP11-262I2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-238
0.045
1
7mer
244-259
0.004
0
7mer
241-252
0.003
0
CTD-2553L13.10
hsa-miR-107
0.924
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000612269
Biotype: lincRNA
Gene id: ENSG00000274104
Gene Name: CTD-2553L13.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-14
0.052
1
RP11-1000B6.7
hsa-miR-107
0.924
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616244
Biotype: sense_intronic
Gene id: ENSG00000276724
Gene Name: RP11-1000B6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-173
0.052
0
LINC01125
hsa-miR-107
0.924
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000600606
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-181
0.042
0
7mer
508-529
0.009
5
RP1-302G2.5
hsa-miR-107
0.923
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000573382
Biotype: lincRNA
Gene id: ENSG00000262179
Gene Name: RP1-302G2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-107
0.015
9
6mer
84-109
0.009
9
6mer
138-151
0.008
8
7mer
61-80
0.007
3
7mer
71-92
0.006
1
6mer
61-77
0.004
3
6mer
90-116
0.002
2
XLOC_010506
hsa-miR-107
0.920
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021915
Biotype: transcript isomorph
Gene id: XLOC_010506
Gene Name: XLOC_010506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-49
0.051
1
ATXN8OS
hsa-miR-107
0.919
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000414504
Biotype: antisense
Gene id: ENSG00000230223
Gene Name: ATXN8OS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1094-1109
0.006
Not Conserved
6mer
155-178
0.006
6
7mer
1100-1112
0.004
Not Conserved
7mer
1100-1115
0.004
Not Conserved
7mer
1105-1124
0.003
Not Conserved
7mer
1104-1127
0.003
Not Conserved
7mer
1100-1118
0.003
Not Conserved
7mer
1105-1121
0.003
Not Conserved
7mer
1113-1136
0.003
Not Conserved
7mer
1110-1133
0.003
Not Conserved
7mer
1107-1130
0.003
Not Conserved
7mer
1116-1139
0.003
Not Conserved
7mer
1119-1142
0.003
Not Conserved
7mer
1122-1145
0.003
Not Conserved
AC007392.4
hsa-miR-107
0.919
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451698
Biotype: lincRNA
Gene id: ENSG00000237179
Gene Name: AC007392.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-184
0.050
9
LINC01125
hsa-miR-107
0.918
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601580
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-244
0.039
0
7mer
670-691
0.011
5
RP11-96D1.10
hsa-miR-107
0.918
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571975
Biotype: sense_overlapping
Gene id: ENSG00000263276
Gene Name: RP11-96D1.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
870-891
0.018
2
7mer
2989-3000
0.012
9
7mer
2989-3003
0.011
9
7mer
2035-2059
0.009
8
LINC01376
hsa-miR-107
0.918
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432142
Biotype: lincRNA
Gene id: ENSG00000236204
Gene Name: LINC01376
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
58-79
0.050
8
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