LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
LINC01517
hsa-miR-107
0.944
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611112
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-104
0.057
0
DNM3-IT1
hsa-miR-107
0.944
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450800
Biotype: sense_intronic
Gene id: ENSG00000233540
Gene Name: DNM3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-40
0.057
1
RBMS3-AS1
hsa-miR-107
0.942
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000414547
Biotype: antisense
Gene id: ENSG00000235593
Gene Name: RBMS3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-97
0.056
4
XLOC_013543
hsa-miR-107
0.942
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028193
Biotype: transcript isomorph
Gene id: XLOC_013543
Gene Name: XLOC_013543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-209
0.009
1
7mer
3882-3896
0.009
1
7mer
3766-3791
0.006
0
7mer
237-262
0.006
0
6mer
130-156
0.004
1
6mer
3924-3948
0.003
0
8mer
2235-2262
0.002
Not Conserved
6mer
291-314
0.002
0
6mer
304-321
0.002
0
7mer
2536-2560
0.002
Not Conserved
6mer
3503-3529
0.002
0
7mer
1975-1991
0.002
Not Conserved
6mer
3238-3263
0.001
Not Conserved
7mer
2891-2909
0.001
Not Conserved
7mer
2775-2801
0.001
0
6mer
1720-1734
0.001
Not Conserved
7mer
2022-2047
0.001
Not Conserved
6mer
3293-3315
0.001
Not Conserved
6mer
2674-2694
0.001
Not Conserved
7mer
2674-2697
0.001
Not Conserved
RP11-479O17.10
hsa-miR-107
0.942
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608229
Biotype: lincRNA
Gene id: ENSG00000273372
Gene Name: RP11-479O17.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3810-3826
0.038
1
9mer
2462-2483
0.015
0
6mer
250-268
0.003
Not Conserved
MIR133A1HG
hsa-miR-107
0.940
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577659
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-56
0.050
5
6mer
49-71
0.005
2
LINC00960
hsa-miR-107
0.940
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-382
0.056
1
RP1-156L9.1
hsa-miR-107
0.939
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419784
Biotype: lincRNA
Gene id: ENSG00000236485
Gene Name: RP1-156L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
57-78
0.055
0
H19
hsa-miR-107
0.939
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000442037
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
667-691
0.055
5
RP11-214K3.24
hsa-miR-107
0.938
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621669
Biotype: lincRNA
Gene id: ENSG00000275389
Gene Name: RP11-214K3.24
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2705-2727
0.044
1
6mer
2250-2274
0.004
2
6mer
508-526
0.003
1
6mer
555-576
0.002
0
6mer
2619-2639
0.002
0
RP11-550I24.2
hsa-miR-107
0.937
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460796
Biotype: retained_intron
Gene id: ENSG00000243176
Gene Name: RP11-550I24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-452
0.055
1
AC024132.1
hsa-miR-107
0.935
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000382007
Biotype: lincRNA
Gene id: ENSG00000205830
Gene Name: AC024132.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-244
0.048
6
7mer
1228-1251
0.004
0
7mer
1430-1456
0.003
1
RP6-24A23.7
hsa-miR-107
0.935
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-351
0.048
9
7mer
2378-2395
0.006
4
XLOC_008207
hsa-miR-107
0.935
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017361
Biotype: transcript isomorph
Gene id: XLOC_008207
Gene Name: XLOC_008207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-328
0.048
9
7mer
2355-2372
0.006
4
RP11-96B5.4
hsa-miR-107
0.934
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000561565
Biotype: lincRNA
Gene id: ENSG00000261368
Gene Name: RP11-96B5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
922-931
0.037
1
7mer
46-72
0.017
0
TTC28-AS1
hsa-miR-107
0.934
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000433317
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2121-2140
0.016
1
7mer
177-198
0.010
6
7mer
2938-2959
0.009
2
6mer
183-200
0.008
10
7mer
2425-2442
0.007
1
7mer
1512-1523
0.004
10
LINC01125
hsa-miR-107
0.933
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598824
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-188
0.043
0
7mer
614-635
0.011
5
RP4-761J14.8
hsa-miR-107
0.932
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000396799
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1275-1298
0.006
8
7mer
1272-1295
0.004
5
7mer
1269-1292
0.004
5
7mer
1254-1277
0.004
4
6mer
813-837
0.003
6
7mer
1247-1268
0.003
2
7mer
1244-1265
0.003
1
6mer
1365-1389
0.003
5
6mer
1385-1404
0.003
3
7mer
1247-1274
0.003
3
7mer
1266-1289
0.002
1
7mer
1257-1280
0.002
1
7mer
1260-1283
0.002
1
7mer
1244-1262
0.002
0
7mer
1263-1286
0.002
0
7mer
1247-1271
0.002
1
7mer
1379-1402
0.002
0
6mer
1371-1396
0.002
1
7mer
1379-1399
0.002
Not Conserved
AP000473.6
hsa-miR-107
0.932
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000444868
Biotype: lincRNA
Gene id: ENSG00000237735
Gene Name: AP000473.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-165
0.053
0
AP003774.6
hsa-miR-107
0.931
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457725
Biotype: lincRNA
Gene id: ENSG00000231680
Gene Name: AP003774.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
861-887
0.026
2
7mer
263-280
0.015
1
7mer
841-865
0.012
0
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