LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
GATA3-AS1
hsa-miR-107
0.703
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000355358
Biotype: lincRNA
Gene id: ENSG00000197308
Gene Name: GATA3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2080-2097
0.012
1
9mer
2152-2168
0.009
1
6mer
847-864
0.004
5
LINC00892
hsa-miR-107
0.703
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000454385
Biotype: antisense
Gene id: ENSG00000233093
Gene Name: LINC00892
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-252
0.010
1
6mer
519-530
0.008
3
6mer
18-37
0.007
5
HNRNPUL2-BSCL2
hsa-miR-107
0.703
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037946.1
Biotype: sense
Gene id: NR_037946.1 (gene)
Gene Name: HNRNPUL2-BSCL2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
856-869
0.013
7
6mer
3519-3544
0.005
7
6mer
1394-1410
0.002
2
6mer
1221-1244
0.001
6
6mer
768-793
0.001
2
7mer
1218-1239
0.001
5
6mer
1216-1239
0.001
6
6mer
1392-1410
0.001
0
AC116035.1
hsa-miR-107
0.702
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000450746
Biotype: lincRNA
Gene id: ENSG00000227260
Gene Name: AC116035.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-60
0.025
1
RP11-124N3.3
hsa-miR-107
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504827
Biotype: lincRNA
Gene id: ENSG00000249174
Gene Name: RP11-124N3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-62
0.025
Not Conserved
PDX1-AS1
hsa-miR-107
0.702
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000499662
Biotype: antisense
Gene id: ENSG00000247381
Gene Name: PDX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
746-772
0.011
0
8mer
1137-1158
0.005
0
7mer
840-862
0.005
1
6mer
933-951
0.003
2
6mer
1135-1158
0.001
Not Conserved
LINC00965
hsa-miR-107
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027000.1
Biotype: lincRNA
Gene id: NR_027000.1 (gene)
Gene Name: LINC00965
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-333
0.023
Not Conserved
6mer
2836-2861
0.002
Not Conserved
RP11-420A23.1
hsa-miR-107
0.702
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511497
Biotype: lincRNA
Gene id: ENSG00000251432
Gene Name: RP11-420A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1769-1787
0.013
1
7mer
302-325
0.009
0
6mer
930-954
0.002
1
XLOC_010500
hsa-miR-107
0.701
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021905
Biotype: transcript isomorph
Gene id: XLOC_010500
Gene Name: XLOC_010500
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-88
0.017
0
7mer
178-190
0.007
Not Conserved
RP11-388C12.8
hsa-miR-107
0.701
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572594
Biotype: sense_intronic
Gene id: ENSG00000262410
Gene Name: RP11-388C12.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-199
0.025
0
RP11-431M7.2
hsa-miR-107
0.701
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504344
Biotype: antisense
Gene id: ENSG00000251438
Gene Name: RP11-431M7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-180
0.012
0
8mer
192-211
0.012
0
XLOC_002087
hsa-miR-107
0.700
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004246
Biotype: transcript isomorph
Gene id: XLOC_002087
Gene Name: XLOC_002087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
471-493
0.025
5
RP11-327P2.5
hsa-miR-107
0.700
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618844
Biotype: antisense
Gene id: ENSG00000231856
Gene Name: RP11-327P2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1680-1698
0.014
2
6mer
1182-1200
0.004
2
7mer
1089-1106
0.004
1
6mer
976-990
0.002
1
RP11-278A23.1
hsa-miR-107
0.700
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000538868
Biotype: lincRNA
Gene id: ENSG00000226180
Gene Name: RP11-278A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2426-2442
0.007
Not Conserved
7mer
1884-1903
0.004
0
7mer
1336-1360
0.003
0
6mer
2139-2158
0.003
0
6mer
2116-2139
0.003
0
6mer
1675-1702
0.002
0
6mer
633-658
0.001
0
6mer
1602-1620
0.001
0
7mer
1599-1620
0.001
0
XLOC_003734
hsa-miR-107
0.700
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008904
Biotype: transcript isomorph
Gene id: XLOC_003734
Gene Name: XLOC_003734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
835-855
0.011
1
7mer
580-591
0.010
1
6mer
2459-2473
0.004
1
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