LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
LINC00309
hsa-miR-107
0.954
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431020
Biotype: lincRNA
Gene id: ENSG00000230923
Gene Name: LINC00309
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-207
0.039
4
7mer
1737-1757
0.009
6
7mer
2992-3007
0.006
0
7mer
1924-1946
0.002
4
6mer
1519-1535
0.001
1
7mer
2073-2098
0.001
3
6mer
2076-2101
0.001
1
6mer
1927-1946
0.001
0
XLOC_013779
hsa-miR-107
0.954
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028429
Biotype: transcript isomorph
Gene id: XLOC_013779
Gene Name: XLOC_013779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3102-3124
0.012
1
7mer
3049-3074
0.008
1
7mer
2887-2914
0.006
1
8mer
231-250
0.005
Not Conserved
8mer
655-680
0.004
Not Conserved
6mer
2997-3020
0.004
1
8mer
738-757
0.003
Not Conserved
7mer
953-980
0.003
1
6mer
956-980
0.003
1
7mer
846-873
0.002
Not Conserved
7mer
496-517
0.002
Not Conserved
6mer
388-414
0.002
0
6mer
2990-3007
0.002
0
7mer
1111-1136
0.001
Not Conserved
6mer
1271-1285
0.001
Not Conserved
7mer
1164-1188
0.001
Not Conserved
6mer
1681-1698
0.001
Not Conserved
XLOC_002123
hsa-miR-107
0.954
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002666
Biotype: transcript isomorph
Gene id: XLOC_002123
Gene Name: XLOC_002123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-204
0.039
4
7mer
1734-1754
0.009
6
7mer
2989-3004
0.006
0
7mer
1921-1943
0.002
4
6mer
1516-1532
0.001
1
7mer
2070-2095
0.001
3
6mer
2073-2098
0.001
1
6mer
1924-1943
0.001
0
RP11-114G22.1
hsa-miR-107
0.954
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000593117
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
608-627
0.016
4
6mer
618-639
0.013
7
7mer
670-683
0.012
1
6mer
689-716
0.010
4
6mer
693-718
0.009
4
RP1-74M1.3
hsa-miR-107
0.951
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610135
Biotype: lincRNA
Gene id: ENSG00000272796
Gene Name: RP1-74M1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4322-4335
0.019
4
8mer
3208-3221
0.016
3
6mer
105-131
0.009
7
6mer
3743-3766
0.004
4
6mer
35-50
0.004
2
7mer
1513-1532
0.003
3
6mer
4432-4449
0.002
1
6mer
1558-1584
0.001
6
XLOC_006753
hsa-miR-107
0.951
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015261
Biotype: transcript isomorph
Gene id: XLOC_006753
Gene Name: XLOC_006753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5667-5689
0.026
11
7mer
687-710
0.012
4
6mer
6258-6271
0.004
6
6mer
1117-1134
0.004
5
6mer
397-422
0.003
2
7mer
1333-1357
0.003
0
6mer
793-814
0.002
4
6mer
6287-6311
0.002
4
6mer
1703-1729
0.002
1
6mer
5395-5409
0.001
1
CTC-459F4.3
hsa-miR-107
0.951
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585827
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
498-517
0.023
0
7mer
150-176
0.020
0
7mer
157-179
0.016
0
ZNRD1-AS1
hsa-miR-107
0.951
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8023-8039
0.032
1
6mer
82-103
0.009
0
7mer
3887-3906
0.005
0
6mer
2237-2257
0.005
1
6mer
8618-8642
0.004
1
6mer
611-633
0.004
0
6mer
2118-2141
0.001
0
STAG3L5P-PVRIG2P-PILRB
hsa-miR-107
0.951
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036570.1
Biotype: sense
Gene id: NR_036570.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-450
0.021
0
9mer
2986-3002
0.017
0
7mer
854-878
0.008
1
6mer
1371-1396
0.004
4
7mer
2075-2097
0.002
2
7mer
1067-1092
0.002
2
6mer
1663-1678
0.001
1
6mer
2095-2117
0.001
2
7mer
2082-2109
0.001
1
6mer
2082-2099
0.001
2
6mer
1695-1717
0.001
1
6mer
1695-1715
0.001
0
RP11-15B17.1
hsa-miR-107
0.951
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515026
Biotype: antisense
Gene id: ENSG00000245322
Gene Name: RP11-15B17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
675-691
0.030
5
8mer
15-42
0.008
Not Conserved
7mer
25-45
0.007
0
6mer
447-465
0.006
5
6mer
675-693
0.005
3
6mer
371-381
0.003
0
RP11-121C6.5
hsa-miR-107
0.949
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610448
Biotype: lincRNA
Gene id: ENSG00000276272
Gene Name: RP11-121C6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-230
0.044
2
6mer
425-436
0.004
1
7mer
427-436
0.004
1
6mer
904-916
0.003
0
6mer
489-505
0.003
1
CTC-490G23.4
hsa-miR-107
0.948
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000607109
Biotype: antisense
Gene id: ENSG00000272396
Gene Name: CTC-490G23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
406-427
0.040
Not Conserved
7mer
116-131
0.016
0
6mer
299-319
0.002
Not Conserved
AC004053.1
hsa-miR-107
0.946
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500179
Biotype: antisense
Gene id: ENSG00000245384
Gene Name: AC004053.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
207-232
0.027
2
6mer
33-46
0.015
13
6mer
37-55
0.008
10
6mer
37-57
0.007
10
RP11-111A21.1
hsa-miR-107
0.946
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554328
Biotype: lincRNA
Gene id: ENSG00000258526
Gene Name: RP11-111A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-143
0.057
1
RP11-206L10.3
hsa-miR-107
0.946
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3456-3482
0.041
0
6mer
4513-4534
0.017
0
CTC-459F4.3
hsa-miR-107
0.946
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588636
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
534-553
0.021
0
7mer
186-212
0.021
0
7mer
193-215
0.016
0
LINC01105
hsa-miR-107
0.946
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431188
Biotype: lincRNA
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-188
0.039
3
9mer
2973-2993
0.018
0
RP11-34P13.13
hsa-miR-107
0.946
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3456-3482
0.041
1
6mer
4513-4534
0.017
1
RP11-290L1.3
hsa-miR-107
0.945
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552367
Biotype: antisense
Gene id: ENSG00000257453
Gene Name: RP11-290L1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-342
0.007
7
7mer
314-339
0.007
7
6mer
355-378
0.006
8
6mer
46-64
0.006
8
7mer
325-345
0.006
5
7mer
310-333
0.005
5
7mer
310-336
0.005
5
7mer
337-363
0.005
3
7mer
337-357
0.004
2
7mer
337-360
0.003
1
7mer
331-354
0.003
2
CTC-276P9.2
hsa-miR-107
0.945
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507058
Biotype: lincRNA
Gene id: ENSG00000248753
Gene Name: CTC-276P9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-464
0.057
5
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