LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
AC005481.5
hsa-miR-107
0.707
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000409610
Biotype: antisense
Gene id: ENSG00000222012
Gene Name: AC005481.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2660-2671
0.019
1
8mer
2250-2272
0.004
0
6mer
746-760
0.001
0
6mer
746-762
0.001
0
SUCLG2-AS1
hsa-miR-107
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496640
Biotype: lincRNA
Gene id: ENSG00000241316
Gene Name: SUCLG2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
423-448
0.021
2
6mer
313-323
0.004
1
RP11-475A13.1
hsa-miR-107
0.707
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558262
Biotype: lincRNA
Gene id: ENSG00000259737
Gene Name: RP11-475A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
268-292
0.011
0
7mer
262-283
0.008
1
7mer
265-292
0.006
0
XLOC_008329
hsa-miR-107
0.706
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017592
Biotype: transcript isomorph
Gene id: XLOC_008329
Gene Name: XLOC_008329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-269
0.025
0
SOX9-AS1
hsa-miR-107
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000446332
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-315
0.011
1
7mer
301-315
0.009
1
6mer
414-435
0.005
1
PGM5P3-AS1
hsa-miR-107
0.706
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000622412
Biotype: lincRNA
Gene id: ENSG00000277631
Gene Name: PGM5P3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-381
0.018
3
8mer
325-350
0.007
Not Conserved
RP11-1197K16.2
hsa-miR-107
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574647
Biotype: antisense
Gene id: ENSG00000262339
Gene Name: RP11-1197K16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-235
0.019
0
6mer
29-49
0.006
0
LINC00919
hsa-miR-107
0.705
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565742
Biotype: lincRNA
Gene id: ENSG00000260268
Gene Name: LINC00919
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-373
0.025
1
TTN-AS1
hsa-miR-107
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590932
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-526
0.020
10
6mer
502-528
0.005
7
RP1-310O13.7
hsa-miR-107
0.705
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449519
Biotype: antisense
Gene id: ENSG00000226239
Gene Name: RP1-310O13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1551-1573
0.019
13
6mer
488-513
0.003
0
6mer
1781-1804
0.002
Not Conserved
6mer
735-755
0.002
0
SNHG16
hsa-miR-107
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000493536
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-250
0.009
1
6mer
1657-1669
0.004
1
6mer
2267-2281
0.003
1
6mer
2008-2031
0.003
1
6mer
2260-2279
0.003
1
6mer
132-153
0.002
0
TMEM191C
hsa-miR-107
0.704
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000449424
Biotype: lincRNA
Gene id: ENSG00000206140
Gene Name: TMEM191C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
70-96
0.011
7
7mer
70-94
0.005
3
6mer
70-91
0.003
3
6mer
206-231
0.002
1
7mer
952-972
0.002
1
6mer
1096-1110
0.001
4
6mer
991-1008
0.001
1
XLOC_000490
hsa-miR-107
0.704
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001218
Biotype: transcript isomorph
Gene id: XLOC_000490
Gene Name: XLOC_000490
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-490
0.020
1
7mer
189-208
0.005
1
AC100802.3
hsa-miR-107
0.704
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519197
Biotype: antisense
Gene id: ENSG00000253775
Gene Name: AC100802.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-192
0.010
1
6mer
178-194
0.004
1
6mer
673-695
0.004
0
6mer
832-852
0.004
2
7mer
225-249
0.003
0
SRRM2-AS1
hsa-miR-107
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000382313
Biotype: antisense
Gene id: ENSG00000205913
Gene Name: SRRM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-195
0.024
1
6mer
2403-2422
0.001
1
RP11-589B3.6
hsa-miR-107
0.704
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421256
Biotype: lincRNA
Gene id: ENSG00000226676
Gene Name: RP11-589B3.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-145
0.013
1
6mer
117-129
0.011
1
XLOC_004804
hsa-miR-107
0.704
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010322
Biotype: transcript isomorph
Gene id: XLOC_004804
Gene Name: XLOC_004804
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3882-3900
0.006
0
7mer
2932-2949
0.006
1
6mer
4344-4367
0.005
1
7mer
1520-1543
0.004
0
6mer
1677-1696
0.002
1
6mer
2478-2505
0.002
1
DKFZP434L187
hsa-miR-107
0.704
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000455163
Biotype: lincRNA
Gene id: ENSG00000225930
Gene Name: DKFZP434L187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-112
0.025
1
XLOC_008724
hsa-miR-107
0.703
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017728
Biotype: transcript isomorph
Gene id: XLOC_008724
Gene Name: XLOC_008724
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2279-2296
0.012
1
9mer
2351-2367
0.009
1
6mer
847-864
0.004
5
RP1-111C20.4
hsa-miR-107
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607391
Biotype: antisense
Gene id: ENSG00000271913
Gene Name: RP1-111C20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-129
0.015
1
7mer
1428-1450
0.007
0
6mer
54-75
0.004
0
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