LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
RP11-486O12.2
hsa-miR-107
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000498967
Biotype: lincRNA
Gene id: ENSG00000247373
Gene Name: RP11-486O12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
777-795
0.024
0
6mer
6877-6893
0.001
1
ZNF252P-AS1
hsa-miR-107
0.711
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000527067
Biotype: antisense
Gene id: ENSG00000255559
Gene Name: ZNF252P-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2442-2459
0.022
1
6mer
512-529
0.003
1
STX17-AS1
hsa-miR-107
0.710
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000529965
Biotype: antisense
Gene id: ENSG00000255145
Gene Name: STX17-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-139
0.019
2
7mer
464-484
0.003
1
6mer
467-493
0.003
1
CTD-2292P10.4
hsa-miR-107
0.710
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520572
Biotype: antisense
Gene id: ENSG00000253741
Gene Name: CTD-2292P10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
663-683
0.020
1
6mer
4980-4992
0.003
1
6mer
4515-4534
0.002
0
7mer
4512-4534
0.001
1
XLOC_013697
hsa-miR-107
0.710
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028348
Biotype: transcript isomorph
Gene id: XLOC_013697
Gene Name: XLOC_013697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2117-2135
0.013
1
7mer
1595-1608
0.004
2
8mer
1351-1377
0.003
0
6mer
2702-2725
0.002
1
6mer
1891-1909
0.002
0
6mer
1487-1511
0.002
2
RP11-206L10.9
hsa-miR-107
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412115
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-150
0.021
0
6mer
194-208
0.004
1
AC073218.3
hsa-miR-107
0.710
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458413
Biotype: lincRNA
Gene id: ENSG00000232153
Gene Name: AC073218.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-90
0.019
0
6mer
51-77
0.006
2
RP11-166D19.1
hsa-miR-107
0.710
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529823
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2810-2828
0.025
7
XLOC_010113
hsa-miR-107
0.710
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020825
Biotype: transcript isomorph
Gene id: XLOC_010113
Gene Name: XLOC_010113
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-285
0.025
2
RP1-193H18.2
hsa-miR-107
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588041
Biotype: lincRNA
Gene id: ENSG00000267194
Gene Name: RP1-193H18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
651-667
0.025
5
XLOC_000907
hsa-miR-107
0.709
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001568
Biotype: transcript isomorph
Gene id: XLOC_000907
Gene Name: XLOC_000907
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
134-155
0.025
0
RP11-572O6.1
hsa-miR-107
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607025
Biotype: lincRNA
Gene id: ENSG00000271973
Gene Name: RP11-572O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-120
0.016
2
7mer
34-58
0.009
0
RP11-53B5.1
hsa-miR-107
0.709
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443771
Biotype: lincRNA
Gene id: ENSG00000231990
Gene Name: RP11-53B5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-275
0.013
0
7mer
120-146
0.012
1
RP11-166D19.1
hsa-miR-107
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531381
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2834-2852
0.025
7
LINC00426
hsa-miR-107
0.708
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000420219
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
974-994
0.011
1
8mer
894-908
0.006
1
6mer
937-945
0.004
2
6mer
986-1005
0.004
2
XLOC_003700
hsa-miR-107
0.708
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007404
Biotype: transcript isomorph
Gene id: XLOC_003700
Gene Name: XLOC_003700
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1026-1047
0.025
5
RP11-1086F11.1
hsa-miR-107
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417786
Biotype: sense_intronic
Gene id: ENSG00000225300
Gene Name: RP11-1086F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
15-30
0.016
1
6mer
1813-1829
0.006
0
8mer
1572-1590
0.003
Not Conserved
TEX41
hsa-miR-107
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609705
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-536
0.025
0
RP11-785F11.1
hsa-miR-107
0.707
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509798
Biotype: lincRNA
Gene id: ENSG00000250341
Gene Name: RP11-785F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1026-1047
0.025
5
RP11-319G6.1
hsa-miR-107
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000510068
Biotype: antisense
Gene id: ENSG00000248932
Gene Name: RP11-319G6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-322
0.019
2
6mer
209-234
0.006
1
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