LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
XLOC_013448
hsa-miR-107
0.714
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028098
Biotype: transcript isomorph
Gene id: XLOC_013448
Gene Name: XLOC_013448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-198
0.009
1
6mer
808-820
0.008
1
6mer
697-718
0.005
0
6mer
759-778
0.004
0
CTC-518B2.10
hsa-miR-107
0.714
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601280
Biotype: lincRNA
Gene id: ENSG00000268390
Gene Name: CTC-518B2.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-309
0.026
1
LOC149134
hsa-miR-107
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_015422.1
Biotype: lincRNA
Gene id: NR_015422.1 (gene)
Gene Name: LOC149134
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-316
0.026
6
XLOC_006645
hsa-miR-107
0.714
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014006
Biotype: transcript isomorph
Gene id: XLOC_006645
Gene Name: XLOC_006645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3167-3185
0.017
1
7mer
2730-2739
0.008
1
AC012123.1
hsa-miR-107
0.714
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000426194
Biotype: antisense
Gene id: ENSG00000228835
Gene Name: AC012123.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
788-811
0.015
2
6mer
564-579
0.011
14
RP11-351J23.2
hsa-miR-107
0.714
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000609107
Biotype: lincRNA
Gene id: ENSG00000272549
Gene Name: RP11-351J23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1566-1592
0.010
0
6mer
61-77
0.008
1
7mer
4323-4349
0.002
0
6mer
4326-4352
0.002
0
6mer
1032-1052
0.002
1
8mer
3270-3290
0.001
0
6mer
1979-1999
0.001
0
RP11-739N10.1
hsa-miR-107
0.713
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584546
Biotype: lincRNA
Gene id: ENSG00000264151
Gene Name: RP11-739N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1225-1247
0.026
3
RP11-91P17.1
hsa-miR-107
0.713
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521879
Biotype: lincRNA
Gene id: ENSG00000254001
Gene Name: RP11-91P17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-31
0.011
1
7mer
5-28
0.010
1
6mer
315-341
0.005
1
CTD-2297D10.2
hsa-miR-107
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512155
Biotype: antisense
Gene id: ENSG00000250579
Gene Name: CTD-2297D10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-141
0.009
1
7mer
622-638
0.007
0
7mer
571-591
0.005
0
7mer
416-437
0.003
0
6mer
97-109
0.002
0
LINC00928
hsa-miR-107
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561201
Biotype: lincRNA
Gene id: ENSG00000259218
Gene Name: LINC00928
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
515-540
0.012
0
6mer
895-921
0.006
0
7mer
305-331
0.004
2
6mer
579-600
0.002
1
6mer
308-331
0.002
1
RP11-575I8.1
hsa-miR-107
0.712
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000562922
Biotype: lincRNA
Gene id: ENSG00000260390
Gene Name: RP11-575I8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2044-2067
0.025
1
RP11-507B12.1
hsa-miR-107
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559590
Biotype: lincRNA
Gene id: ENSG00000259675
Gene Name: RP11-507B12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-158
0.025
9
RP11-356I2.4
hsa-miR-107
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606998
Biotype: antisense
Gene id: ENSG00000237499
Gene Name: RP11-356I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-208
0.013
2
7mer
1827-1841
0.012
0
LINC01486
hsa-miR-107
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538041
Biotype: lincRNA
Gene id: ENSG00000256560
Gene Name: LINC01486
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-379
0.025
1
AC020743.4
hsa-miR-107
0.712
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440351
Biotype: lincRNA
Gene id: ENSG00000235620
Gene Name: AC020743.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-254
0.017
5
6mer
129-152
0.004
0
7mer
259-279
0.004
0
NFIA-AS2
hsa-miR-107
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418662
Biotype: antisense
Gene id: ENSG00000237928
Gene Name: NFIA-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-299
0.025
0
LINC00317
hsa-miR-107
0.712
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419069
Biotype: lincRNA
Gene id: ENSG00000238265
Gene Name: LINC00317
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-372
0.025
0
TTN-AS1
hsa-miR-107
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438095
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-105
0.020
10
6mer
81-107
0.006
7
LINC01248
hsa-miR-107
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458264
Biotype: antisense
Gene id: ENSG00000224128
Gene Name: LINC01248
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-31
0.025
3
HCG18
hsa-miR-107
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602516
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2512-2527
0.009
1
7mer
134-148
0.008
2
6mer
1937-1959
0.004
0
6mer
132-148
0.004
1
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