LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
LINC00969
hsa-miR-107
0.717
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000445430
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
332-355
0.017
4
7mer
1575-1595
0.006
7
7mer
581-596
0.003
2
MCM3AP-AS1
hsa-miR-107
0.717
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_002776.3
Biotype: antisense
Gene id: NR_002776.3 (gene)
Gene Name: MCM3AP-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2181-2196
0.015
5
7mer
303-328
0.006
1
6mer
303-325
0.004
3
RP11-201M22.1
hsa-miR-107
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000577699
Biotype: lincRNA
Gene id: ENSG00000255332
Gene Name: RP11-201M22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
867-883
0.023
2
6mer
327-348
0.003
1
XLOC_013693
hsa-miR-107
0.716
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028343
Biotype: transcript isomorph
Gene id: XLOC_013693
Gene Name: XLOC_013693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
619-641
0.026
0
FRMD6-AS2
hsa-miR-107
0.716
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556617
Biotype: lincRNA
Gene id: ENSG00000258537
Gene Name: FRMD6-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-334
0.026
0
CTD-2587H24.14
hsa-miR-107
0.716
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586923
Biotype: retained_intron
Gene id: ENSG00000276570
Gene Name: CTD-2587H24.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-42
0.011
1
7mer
268-282
0.005
5
7mer
265-282
0.004
2
6mer
112-134
0.003
1
6mer
1173-1195
0.002
1
6mer
1394-1411
0.001
1
XLOC_007773
hsa-miR-107
0.716
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016402
Biotype: transcript isomorph
Gene id: XLOC_007773
Gene Name: XLOC_007773
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-102
0.026
1
RP11-218C14.5
hsa-miR-107
0.716
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000450971
Biotype: lincRNA
Gene id: ENSG00000225056
Gene Name: RP11-218C14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-390
0.026
3
CTA-929C8.9
hsa-miR-107
0.716
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12130-12153
0.006
1
7mer
11290-11311
0.006
1
8mer
1250-1268
0.006
1
6mer
17670-17691
0.002
1
6mer
5156-5180
0.002
2
7mer
16136-16163
0.002
1
6mer
23876-23894
0.002
0
7mer
15472-15498
0.001
0
CTD-2311B13.1
hsa-miR-107
0.716
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551565
Biotype: lincRNA
Gene id: ENSG00000257891
Gene Name: CTD-2311B13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
464-478
0.017
1
7mer
6-29
0.005
Not Conserved
6mer
49-70
0.003
Not Conserved
6mer
307-327
0.001
Not Conserved
XLOC_012824
hsa-miR-107
0.716
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026498
Biotype: transcript isomorph
Gene id: XLOC_012824
Gene Name: XLOC_012824
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
298-319
0.026
4
MCM3AP-AS1
hsa-miR-107
0.716
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455567
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2181-2196
0.015
5
7mer
303-328
0.006
1
6mer
303-325
0.004
3
XLOC_007830
hsa-miR-107
0.716
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016465
Biotype: transcript isomorph
Gene id: XLOC_007830
Gene Name: XLOC_007830
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1071-1096
0.023
1
6mer
996-1015
0.003
2
LINC00836
hsa-miR-107
0.715
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108069.1
Biotype: lincRNA
Gene id: NR_108069.1 (gene)
Gene Name: LINC00836
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
892-914
0.026
3
LINC01019
hsa-miR-107
0.715
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505443
Biotype: lincRNA
Gene id: ENSG00000248118
Gene Name: LINC01019
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
221-242
0.014
1
6mer
2570-2594
0.004
2
6mer
2863-2887
0.003
0
7mer
2479-2499
0.002
Not Conserved
7mer
2505-2520
0.001
Not Conserved
6mer
2503-2520
0.001
1
6mer
1337-1352
0.001
0
RP11-350G24.1
hsa-miR-107
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549036
Biotype: antisense
Gene id: ENSG00000258007
Gene Name: RP11-350G24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-147
0.016
3
7mer
125-147
0.010
2
RP11-128P17.4
hsa-miR-107
0.715
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609980
Biotype: lincRNA
Gene id: ENSG00000273119
Gene Name: RP11-128P17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
575-601
0.020
3
6mer
532-557
0.005
2
LINC01128
hsa-miR-107
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608189
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-466
0.012
2
8mer
572-591
0.010
1
6mer
72-94
0.004
0
RP1-34H18.1
hsa-miR-107
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550042
Biotype: lincRNA
Gene id: ENSG00000231121
Gene Name: RP1-34H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
849-867
0.024
7
6mer
277-297
0.002
1
AC114877.3
hsa-miR-107
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000446601
Biotype: lincRNA
Gene id: ENSG00000234165
Gene Name: AC114877.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
520-537
0.026
1
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