LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
RP11-408H1.3
hsa-miR-107
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000418839
Biotype: lincRNA
Gene id: ENSG00000223387
Gene Name: RP11-408H1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
426-444
0.011
0
7mer
3077-3094
0.006
2
6mer
3080-3094
0.003
2
7mer
1190-1210
0.002
1
6mer
1027-1043
0.002
1
6mer
2439-2457
0.002
0
AL133243.2
hsa-miR-107
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617415
Biotype: sense_intronic
Gene id: ENSG00000276517
Gene Name: AL133243.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2052-2078
0.018
1
6mer
85-109
0.006
1
6mer
1588-1613
0.002
0
6mer
1691-1717
0.001
0
RP4-734G22.3
hsa-miR-107
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606802
Biotype: antisense
Gene id: ENSG00000272078
Gene Name: RP4-734G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7438-7452
0.008
10
6mer
1515-1528
0.004
13
7mer
5367-5391
0.003
Not Conserved
6mer
523-547
0.003
7
7mer
1678-1704
0.002
2
6mer
4635-4658
0.002
8
6mer
7137-7162
0.002
1
6mer
3105-3117
0.001
3
6mer
3488-3511
0.001
0
6mer
3200-3216
0.000
0
RP11-379J5.5
hsa-miR-107
0.720
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428285
Biotype: antisense
Gene id: ENSG00000233993
Gene Name: RP11-379J5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
527-547
0.008
1
7mer
92-111
0.007
1
6mer
554-576
0.006
4
7mer
886-899
0.005
0
LINC01128
hsa-miR-107
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609009
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-406
0.013
2
8mer
515-534
0.010
1
6mer
12-34
0.004
0
TTN-AS1
hsa-miR-107
0.720
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000586831
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-125
0.020
10
6mer
101-127
0.006
7
CASC2
hsa-miR-107
0.720
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_026941.1
Biotype: lincRNA
Gene id: NR_026941.1 (gene)
Gene Name: CASC2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1762-1786
0.018
4
8mer
201-227
0.007
1
6mer
1387-1412
0.001
1
RP11-588H23.3
hsa-miR-107
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548687
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4750-4771
0.018
1
7mer
370-386
0.005
1
7mer
1094-1115
0.003
1
TMEM191A
hsa-miR-107
0.719
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000450925
Biotype: lincRNA
Gene id: ENSG00000226287
Gene Name: TMEM191A
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1813-1836
0.006
4
6mer
1652-1672
0.004
2
6mer
1808-1834
0.003
2
6mer
1796-1810
0.003
2
6mer
1035-1061
0.002
5
6mer
1035-1056
0.002
3
7mer
1035-1059
0.002
3
6mer
1691-1708
0.002
0
6mer
1210-1225
0.001
Not Conserved
6mer
1175-1200
0.001
1
6mer
1173-1198
0.001
0
ZNRD1-AS1
hsa-miR-107
0.718
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000376797
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3192-3216
0.016
1
7mer
162-186
0.006
0
6mer
501-517
0.002
0
7mer
1019-1045
0.002
0
AC012314.20
hsa-miR-107
0.718
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000426213
Biotype: lincRNA
Gene id: ENSG00000223660
Gene Name: AC012314.20
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
272-282
0.015
1
6mer
270-282
0.011
1
RP11-514P8.8
hsa-miR-107
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000481893
Biotype: processed_transcript
Gene id: ENSG00000272949
Gene Name: RP11-514P8.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3363-3378
0.007
3
6mer
579-600
0.006
9
6mer
577-600
0.003
8
6mer
3381-3403
0.003
2
6mer
344-355
0.003
5
6mer
333-355
0.002
4
6mer
2250-2275
0.002
3
6mer
1869-1888
0.001
4
AC079610.2
hsa-miR-107
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000360083
Biotype: lincRNA
Gene id: ENSG00000196096
Gene Name: AC079610.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
736-759
0.017
0
7mer
1132-1149
0.009
1
RP11-403I13.5
hsa-miR-107
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443018
Biotype: lincRNA
Gene id: ENSG00000232721
Gene Name: RP11-403I13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-339
0.019
0
6mer
2546-2568
0.007
1
RP11-768G7.2
hsa-miR-107
0.718
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462528
Biotype: lincRNA
Gene id: ENSG00000241213
Gene Name: RP11-768G7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-378
0.013
6
7mer
356-378
0.013
5
XLOC_002010
hsa-miR-107
0.717
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004165
Biotype: transcript isomorph
Gene id: XLOC_002010
Gene Name: XLOC_002010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2981-3004
0.008
3
6mer
31-54
0.006
5
7mer
28-54
0.006
1
6mer
158-180
0.005
2
6mer
2007-2030
0.001
Not Conserved
RP11-343L5.2
hsa-miR-107
0.717
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607625
Biotype: lincRNA
Gene id: ENSG00000271862
Gene Name: RP11-343L5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-493
0.023
2
6mer
1077-1089
0.003
0
RP11-181E10.3
hsa-miR-107
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603748
Biotype: lincRNA
Gene id: ENSG00000271590
Gene Name: RP11-181E10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1001-1022
0.026
1
DKFZp434J0226
hsa-miR-107
0.717
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593980
Biotype: lincRNA
Gene id: ENSG00000268460
Gene Name: DKFZp434J0226
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-61
0.010
1
7mer
39-64
0.010
1
6mer
1005-1021
0.005
1
6mer
602-619
0.001
Not Conserved
CTA-796E4.5
hsa-miR-107
0.717
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31323-31339
0.007
0
6mer
31585-31610
0.004
2
6mer
10666-10676
0.004
6
7mer
6584-6607
0.002
0
7mer
5408-5429
0.002
0
6mer
20481-20504
0.001
1
7mer
30150-30176
0.001
1
6mer
8519-8544
0.001
1
7mer
18155-18176
0.001
Not Conserved
6mer
18155-18178
0.000
0
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