LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
CTC-457E21.1
hsa-miR-107
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562262
Biotype: sense_intronic
Gene id: ENSG00000260599
Gene Name: CTC-457E21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
206-226
0.010
4
7mer
1602-1617
0.005
0
6mer
306-317
0.004
0
6mer
2516-2541
0.003
0
7mer
940-955
0.003
0
6mer
938-955
0.001
0
6mer
1518-1545
0.001
0
RP11-362K2.2
hsa-miR-107
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546977
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1271-1295
0.027
1
RP11-216N14.9
hsa-miR-107
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434575
Biotype: antisense
Gene id: ENSG00000233222
Gene Name: RP11-216N14.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-148
0.027
10
XLOC_002958
hsa-miR-107
0.725
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007059
Biotype: transcript isomorph
Gene id: XLOC_002958
Gene Name: XLOC_002958
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-249
0.017
0
7mer
2248-2265
0.008
1
6mer
590-607
0.002
Not Conserved
PGM5P4-AS1
hsa-miR-107
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416105
Biotype: lincRNA
Gene id: ENSG00000231943
Gene Name: PGM5P4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-88
0.018
2
8mer
94-119
0.008
Not Conserved
RP1-309I22.2
hsa-miR-107
0.724
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
518-541
0.009
1
7mer
9984-10011
0.003
2
7mer
27569-27584
0.003
0
7mer
9057-9072
0.002
0
6mer
1320-1341
0.002
3
6mer
22435-22456
0.002
1
6mer
12958-12978
0.001
2
6mer
25469-25478
0.001
0
6mer
3757-3783
0.001
0
6mer
4499-4522
0.001
0
6mer
3896-3919
0.001
0
ZNRD1-AS1
hsa-miR-107
0.723
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000448093
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2219-2243
0.017
1
7mer
162-186
0.006
0
6mer
501-517
0.002
0
7mer
1019-1045
0.002
0
TMEM191C
hsa-miR-107
0.723
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415764
Biotype: retained_intron
Gene id: ENSG00000206140
Gene Name: TMEM191C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
199-225
0.009
7
6mer
1630-1644
0.004
4
7mer
199-223
0.004
3
6mer
199-220
0.003
3
7mer
1486-1506
0.002
1
6mer
1525-1542
0.002
1
6mer
335-360
0.002
1
AC012531.25
hsa-miR-107
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000562848
Biotype: lincRNA
Gene id: ENSG00000260597
Gene Name: AC012531.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2503-2528
0.018
Not Conserved
6mer
1893-1919
0.007
7
6mer
1171-1197
0.001
3
RP11-798M19.6
hsa-miR-107
0.723
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608794
Biotype: antisense
Gene id: ENSG00000272870
Gene Name: RP11-798M19.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-517
0.026
0
RP11-798M19.6
hsa-miR-107
0.723
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609900
Biotype: antisense
Gene id: ENSG00000272870
Gene Name: RP11-798M19.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1834-1851
0.026
0
AC005154.6
hsa-miR-107
0.723
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8131-8151
0.007
Not Conserved
7mer
13896-13917
0.005
1
7mer
10113-10134
0.003
1
6mer
2465-2489
0.003
2
7mer
10630-10652
0.002
1
6mer
4905-4928
0.002
1
6mer
8225-8245
0.001
1
6mer
13151-13163
0.001
1
7mer
10627-10644
0.001
1
6mer
8061-8087
0.001
2
6mer
8000-8015
0.001
0
6mer
10111-10134
0.001
1
6mer
13149-13163
0.000
0
RP11-431J17.1
hsa-miR-107
0.723
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000517407
Biotype: lincRNA
Gene id: ENSG00000253170
Gene Name: RP11-431J17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-84
0.018
3
7mer
69-81
0.009
2
XLOC_012658
hsa-miR-107
0.722
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026319
Biotype: transcript isomorph
Gene id: XLOC_012658
Gene Name: XLOC_012658
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-216
0.026
4
RP3-467K16.4
hsa-miR-107
0.722
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427824
Biotype: lincRNA
Gene id: ENSG00000228140
Gene Name: RP3-467K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4868-4888
0.009
2
8mer
1127-1146
0.005
0
6mer
4921-4945
0.003
1
6mer
489-505
0.003
1
6mer
283-307
0.003
1
7mer
3960-3975
0.003
0
CTA-292E10.9
hsa-miR-107
0.722
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
11744-11767
0.006
15
7mer
10182-10202
0.006
2
6mer
199-225
0.005
1
6mer
14754-14775
0.003
9
7mer
8953-8969
0.002
2
6mer
15114-15123
0.001
2
6mer
1827-1852
0.001
5
6mer
19667-19692
0.001
0
6mer
20351-20364
0.001
0
XLOC_007443
hsa-miR-107
0.722
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016054
Biotype: transcript isomorph
Gene id: XLOC_007443
Gene Name: XLOC_007443
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
179-200
0.021
0
7mer
36-56
0.006
0
MIR4435-1HG
hsa-miR-107
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015395.1
Biotype: lincRNA
Gene id: NR_015395.1 (gene)
Gene Name: MIR4435-1HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-165
0.020
1
6mer
684-695
0.007
3
LINC00680
hsa-miR-107
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-356
0.019
0
6mer
1367-1387
0.007
0
RP11-379J5.5
hsa-miR-107
0.722
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109955.1
Biotype: antisense
Gene id: NR_109955.1 (gene)
Gene Name: RP11-379J5.5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
527-547
0.008
1
7mer
92-111
0.007
1
6mer
554-576
0.006
4
7mer
886-899
0.005
0
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