LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
XLOC_002601
hsa-miR-107
0.730
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005968
Biotype: transcript isomorph
Gene id: XLOC_002601
Gene Name: XLOC_002601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-280
0.011
2
7mer
262-283
0.009
3
6mer
79-101
0.008
1
DDX11-AS1
hsa-miR-107
0.730
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535870
Biotype: antisense
Gene id: ENSG00000245614
Gene Name: DDX11-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
369-381
0.021
1
6mer
111-124
0.006
1
LINC00630
hsa-miR-107
0.730
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000440496
Biotype: lincRNA
Gene id: ENSG00000223546
Gene Name: LINC00630
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-199
0.027
1
FAR2P2
hsa-miR-107
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046260.1
Biotype: lincRNA
Gene id: NR_046260.1 (gene)
Gene Name: FAR2P2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
276-303
0.027
Not Conserved
USP27X-AS1
hsa-miR-107
0.729
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000437322
Biotype: lincRNA
Gene id: ENSG00000234390
Gene Name: USP27X-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1282-1305
0.005
6
6mer
2035-2049
0.004
1
7mer
950-970
0.004
3
7mer
962-989
0.003
0
7mer
953-978
0.002
4
7mer
1870-1897
0.002
0
7mer
959-978
0.002
2
7mer
956-978
0.002
2
6mer
1523-1548
0.002
2
6mer
1425-1452
0.001
1
XLOC_004603
hsa-miR-107
0.729
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010140
Biotype: transcript isomorph
Gene id: XLOC_004603
Gene Name: XLOC_004603
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-207
0.027
1
RP11-473L15.3
hsa-miR-107
0.728
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510758
Biotype: lincRNA
Gene id: ENSG00000249203
Gene Name: RP11-473L15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
423-445
0.015
5
7mer
420-445
0.012
1
RP11-475O6.1
hsa-miR-107
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457273
Biotype: lincRNA
Gene id: ENSG00000233008
Gene Name: RP11-475O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
983-1005
0.014
5
9mer
1482-1502
0.012
2
C14orf182
hsa-miR-107
0.728
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000529902
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3293-3318
0.006
2
7mer
443-470
0.004
3
7mer
437-461
0.004
0
6mer
910-936
0.003
1
7mer
440-460
0.002
1
7mer
3274-3301
0.002
1
6mer
3136-3162
0.002
3
6mer
1174-1187
0.001
1
6mer
1476-1497
0.001
1
6mer
3134-3155
0.001
3
AC008079.10
hsa-miR-107
0.728
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12398-12422
0.006
3
7mer
19175-19195
0.003
0
6mer
13442-13457
0.003
9
6mer
5169-5185
0.002
5
6mer
4237-4257
0.002
1
6mer
11021-11035
0.002
2
6mer
680-697
0.001
Not Conserved
8mer+wobble
8244-8263
0.001
1
7mer
6016-6039
0.001
Not Conserved
6mer
3784-3802
0.001
1
6mer
14932-14951
0.001
1
6mer
10325-10352
0.001
0
6mer
7697-7719
0.001
Not Conserved
6mer
17662-17689
0.001
0
6mer
5645-5671
0.001
Not Conserved
C1RL-AS1
hsa-miR-107
0.727
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536679
Biotype: antisense
Gene id: ENSG00000205885
Gene Name: C1RL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
340-360
0.007
1
7mer
350-372
0.004
1
7mer
345-363
0.004
1
7mer
353-375
0.004
0
7mer
345-369
0.004
1
7mer
345-366
0.004
1
C1RL-AS1
hsa-miR-107
0.727
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541775
Biotype: antisense
Gene id: ENSG00000205885
Gene Name: C1RL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
412-432
0.005
1
6mer
72-94
0.004
2
7mer
22-44
0.004
0
7mer
417-435
0.003
1
7mer
422-444
0.002
1
7mer
417-441
0.002
1
7mer
417-438
0.002
1
7mer
2487-2508
0.002
1
7mer
425-447
0.002
0
6mer
1812-1837
0.001
0
RP11-179A16.1
hsa-miR-107
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500502
Biotype: lincRNA
Gene id: ENSG00000245832
Gene Name: RP11-179A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
715-734
0.024
1
6mer
1223-1246
0.003
0
XLOC_006116
hsa-miR-107
0.727
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013017
Biotype: transcript isomorph
Gene id: XLOC_006116
Gene Name: XLOC_006116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
289-304
0.013
1
6mer
389-414
0.010
1
6mer
350-372
0.004
0
SPECC1L-ADORA2A
hsa-miR-107
0.726
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_103546.1
Biotype: sense
Gene id: NR_103546.1 (gene)
Gene Name: SPECC1L-ADORA2A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5936-5962
0.007
5
6mer
47-66
0.004
3
7mer
4739-4753
0.003
9
6mer
5828-5847
0.003
6
8mer
3927-3947
0.002
1
6mer
829-847
0.002
1
7mer
4860-4873
0.002
2
6mer
2867-2883
0.002
5
6mer
3927-3949
0.001
4
RP11-296E23.2
hsa-miR-107
0.726
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584331
Biotype: sense_intronic
Gene id: ENSG00000265948
Gene Name: RP11-296E23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-254
0.015
1
7mer
296-321
0.012
1
NDUFA6-AS1
hsa-miR-107
0.726
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417327
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1185-1198
0.007
2
7mer
1181-1195
0.007
3
9mer
546-568
0.005
0
6mer
1015-1034
0.003
0
6mer
1454-1470
0.003
0
6mer
566-589
0.001
0
RP11-382J12.1
hsa-miR-107
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518553
Biotype: antisense
Gene id: ENSG00000246366
Gene Name: RP11-382J12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
470-481
0.027
3
RP11-65G9.1
hsa-miR-107
0.726
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000527562
Biotype: lincRNA
Gene id: ENSG00000254488
Gene Name: RP11-65G9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
824-845
0.027
Not Conserved
XLOC_009527
hsa-miR-107
0.725
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019735
Biotype: transcript isomorph
Gene id: XLOC_009527
Gene Name: XLOC_009527
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
46-71
0.027
Not Conserved
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