LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
XLOC_003448
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007978
Biotype: transcript isomorph
Gene id: XLOC_003448
Gene Name: XLOC_003448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-279
0.021
0
6mer
287-300
0.006
0
MUC19
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
830-852
0.010
3
6mer
24513-24522
0.007
8
6mer
24263-24287
0.003
1
7mer
2016-2037
0.002
1
6mer
5261-5283
0.002
3
6mer
5948-5969
0.002
1
6mer
18398-18420
0.001
0
6mer
5702-5721
0.001
3
CASC2
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454781
Biotype: antisense
Gene id: ENSG00000177640
Gene Name: CASC2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1579-1603
0.018
4
8mer
18-44
0.008
1
6mer
1204-1229
0.001
1
XLOC_009857
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020542
Biotype: transcript isomorph
Gene id: XLOC_009857
Gene Name: XLOC_009857
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
420-439
0.027
0
RP11-340I6.1
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451103
Biotype: lincRNA
Gene id: ENSG00000234387
Gene Name: RP11-340I6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
289-304
0.013
1
6mer
389-414
0.010
1
6mer
350-372
0.005
0
PIR-FIGF
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_037859.2
Biotype: sense
Gene id: NR_037859.2 (gene)
Gene Name: PIR-FIGF
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-520
0.020
6
6mer
706-725
0.004
7
6mer
1468-1490
0.003
3
AC062020.2
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435441
Biotype: lincRNA
Gene id: ENSG00000237856
Gene Name: AC062020.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-68
0.016
1
8mer
367-385
0.006
0
6mer
139-154
0.005
2
RP11-23J9.4
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000534123
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
787-802
0.008
0
6mer
5488-5510
0.005
7
7mer
849-872
0.004
8
6mer
66-78
0.002
2
6mer
2523-2543
0.002
6
6mer
5488-5512
0.002
7
6mer
881-902
0.001
5
6mer
5247-5261
0.001
1
6mer
2221-2233
0.001
2
RP11-440L14.1
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503571
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
318-336
0.013
1
6mer
205-224
0.008
0
7mer
320-336
0.007
0
RP11-23J9.4
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000357054
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
787-802
0.008
0
6mer
4906-4928
0.004
7
7mer
849-872
0.004
8
6mer
66-78
0.002
2
6mer
2523-2543
0.002
6
6mer
4906-4930
0.002
7
6mer
881-902
0.001
5
6mer
4665-4679
0.001
1
6mer
2221-2233
0.001
2
XLOC_010241
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020971
Biotype: transcript isomorph
Gene id: XLOC_010241
Gene Name: XLOC_010241
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-39
0.027
0
XLOC_001508
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003719
Biotype: transcript isomorph
Gene id: XLOC_001508
Gene Name: XLOC_001508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3569-3583
0.014
6
7mer
3527-3540
0.010
5
6mer
1973-1990
0.003
8
NCBP2-AS2
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602845
Biotype: lincRNA
Gene id: ENSG00000270170
Gene Name: NCBP2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
701-722
0.015
3
6mer
94-113
0.005
8
6mer
105-127
0.003
5
6mer
81-103
0.002
1
6mer
193-208
0.002
0
XLOC_010069
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020779
Biotype: transcript isomorph
Gene id: XLOC_010069
Gene Name: XLOC_010069
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
307-333
0.027
1
XLOC_009911
hsa-miR-107
0.731
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021223
Biotype: transcript isomorph
Gene id: XLOC_009911
Gene Name: XLOC_009911
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-126
0.027
2
XLOC_010398
hsa-miR-107
0.730
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021795
Biotype: transcript isomorph
Gene id: XLOC_010398
Gene Name: XLOC_010398
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-64
0.027
1
XLOC_011544
hsa-miR-107
0.730
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023200
Biotype: transcript isomorph
Gene id: XLOC_011544
Gene Name: XLOC_011544
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-288
0.019
1
8mer
2319-2339
0.006
0
6mer
1392-1417
0.001
1
6mer
2076-2095
0.001
Not Conserved
RP11-1151B14.4
hsa-miR-107
0.730
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591360
Biotype: antisense
Gene id: ENSG00000267257
Gene Name: RP11-1151B14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
288-308
0.020
Not Conserved
7mer
1536-1555
0.004
2
7mer
751-774
0.003
1
XLOC_010725
hsa-miR-107
0.730
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022315
Biotype: transcript isomorph
Gene id: XLOC_010725
Gene Name: XLOC_010725
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-271
0.013
1
6mer
257-271
0.005
1
7mer
548-570
0.005
1
6mer
2345-2370
0.004
0
LOC648987
hsa-miR-107
0.730
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
793-810
0.010
1
7mer
1743-1761
0.006
0
6mer
2205-2228
0.005
1
6mer
339-366
0.005
1
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