LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
XLOC_003397
hsa-miR-107
0.735
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007353
Biotype: transcript isomorph
Gene id: XLOC_003397
Gene Name: XLOC_003397
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-167
0.013
Not Conserved
6mer
5680-5706
0.005
0
6mer
5625-5651
0.005
0
8mer
3165-3192
0.002
Not Conserved
8mer
1310-1337
0.001
Not Conserved
6mer
2303-2327
0.001
Not Conserved
CTC-484P3.3
hsa-miR-107
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513849
Biotype: antisense
Gene id: ENSG00000249175
Gene Name: CTC-484P3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1910-1931
0.027
1
CTB-131B5.5
hsa-miR-107
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607850
Biotype: retained_intron
Gene id: ENSG00000254363
Gene Name: CTB-131B5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5707-5719
0.008
2
7mer
190-209
0.005
1
6mer
5592-5606
0.005
6
6mer
5412-5435
0.004
0
6mer
893-917
0.003
4
6mer
5592-5608
0.002
1
6mer
4321-4343
0.002
2
AC007461.2
hsa-miR-107
0.735
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000419257
Biotype: lincRNA
Gene id: ENSG00000226101
Gene Name: AC007461.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
429-448
0.027
1
RP11-457M11.5
hsa-miR-107
0.735
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000562904
Biotype: lincRNA
Gene id: ENSG00000261584
Gene Name: RP11-457M11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
985-1007
0.017
0
8mer
1142-1167
0.010
0
RP5-1061H20.4
hsa-miR-107
0.735
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436334
Biotype: lincRNA
Gene id: ENSG00000177788
Gene Name: RP5-1061H20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-37
0.027
1
RP11-461L18.1
hsa-miR-107
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000561496
Biotype: lincRNA
Gene id: ENSG00000261382
Gene Name: RP11-461L18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
826-840
0.027
3
FRMD6-AS2
hsa-miR-107
0.734
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557625
Biotype: lincRNA
Gene id: ENSG00000258537
Gene Name: FRMD6-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-399
0.027
0
SLC16A1-AS1
hsa-miR-107
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435800
Biotype: antisense
Gene id: ENSG00000226419
Gene Name: SLC16A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
972-994
0.016
2
8mer
531-548
0.012
1
CTD-2154I11.2
hsa-miR-107
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513235
Biotype: antisense
Gene id: ENSG00000250240
Gene Name: CTD-2154I11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-67
0.023
0
6mer
385-406
0.004
4
NEAT1
hsa-miR-107
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1507-1533
0.009
4
7mer
21231-21258
0.005
4
6mer
12721-12741
0.002
4
7mer
20482-20500
0.002
1
6mer
765-787
0.002
1
6mer
20965-20981
0.001
1
6mer
18365-18389
0.001
2
6mer
12875-12896
0.001
0
6mer
13740-13765
0.001
1
6mer
19415-19437
0.001
1
6mer
21250-21260
0.001
5
7mer
19415-19440
0.001
1
RP11-883G14.1
hsa-miR-107
0.733
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570245
Biotype: lincRNA
Gene id: ENSG00000261241
Gene Name: RP11-883G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
322-341
0.007
1
7mer
782-796
0.006
Not Conserved
6mer
749-767
0.006
1
6mer
488-511
0.004
5
7mer
488-509
0.004
3
XLOC_000462
hsa-miR-107
0.733
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001200
Biotype: transcript isomorph
Gene id: XLOC_000462
Gene Name: XLOC_000462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
454-481
0.027
1
XLOC_003679
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008217
Biotype: transcript isomorph
Gene id: XLOC_003679
Gene Name: XLOC_003679
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-210
0.016
2
6mer
372-393
0.006
2
6mer
163-173
0.005
0
XLOC_011603
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023825
Biotype: transcript isomorph
Gene id: XLOC_011603
Gene Name: XLOC_011603
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-134
0.012
1
7mer
1354-1376
0.006
2
7mer
2352-2379
0.005
0
6mer
2209-2230
0.002
0
6mer
2355-2381
0.002
2
RP5-1148A21.3
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000584934
Biotype: antisense
Gene id: ENSG00000266680
Gene Name: RP5-1148A21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1166-1183
0.014
1
7mer
667-680
0.013
6
RP11-731J8.2
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5674-5693
0.025
8
6mer
3470-3488
0.002
2
XLOC_009561
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019766
Biotype: transcript isomorph
Gene id: XLOC_009561
Gene Name: XLOC_009561
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-645
0.016
0
7mer
622-645
0.011
0
LINC00937
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536560
Biotype: lincRNA
Gene id: ENSG00000226091
Gene Name: LINC00937
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-253
0.015
0
7mer
127-147
0.007
1
6mer
93-111
0.003
0
6mer
39-63
0.002
0
RP4-607I7.1
hsa-miR-107
0.732
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530263
Biotype: antisense
Gene id: ENSG00000255521
Gene Name: RP4-607I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-262
0.019
0
7mer
214-241
0.008
1
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