LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
LINC00341
hsa-miR-107
0.741
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_026779.1
Biotype: sense
Gene id: NR_026779.1 (gene)
Gene Name: LINC00341
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-474
0.020
4
6mer
2534-2549
0.003
0
8mer
1764-1782
0.002
0
6mer
1828-1849
0.002
3
6mer
1826-1849
0.001
2
DLEU7-AS1
hsa-miR-107
0.741
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413510
Biotype: antisense
Gene id: ENSG00000237152
Gene Name: DLEU7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
471-493
0.014
4
7mer
210-235
0.009
2
7mer
285-308
0.005
1
RP11-367H1.1
hsa-miR-107
0.741
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608316
Biotype: lincRNA
Gene id: ENSG00000273113
Gene Name: RP11-367H1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-258
0.028
1
LINC00839
hsa-miR-107
0.741
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2031-2056
0.017
1
6mer
1225-1248
0.011
1
RP11-44M6.7
hsa-miR-107
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000485071
Biotype: retained_intron
Gene id: ENSG00000274272
Gene Name: RP11-44M6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
206-228
0.005
4
8mer
2548-2563
0.005
5
6mer
389-415
0.004
4
6mer
317-339
0.003
5
7mer
2760-2782
0.002
3
6mer
2169-2182
0.002
0
6mer
754-775
0.001
Not Conserved
6mer
3095-3121
0.001
0
7mer
2545-2563
0.001
6
7mer
2757-2775
0.001
5
6mer
749-767
0.001
0
7mer
751-775
0.001
Not Conserved
7mer
2754-2775
0.001
4
RP11-473L15.3
hsa-miR-107
0.740
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505706
Biotype: lincRNA
Gene id: ENSG00000249203
Gene Name: RP11-473L15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-532
0.015
5
7mer
507-532
0.013
1
XLOC_004269
hsa-miR-107
0.740
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009233
Biotype: transcript isomorph
Gene id: XLOC_004269
Gene Name: XLOC_004269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1956-1967
0.015
1
7mer
190-210
0.006
0
6mer
1572-1592
0.003
1
6mer
380-399
0.003
1
RP11-179A10.1
hsa-miR-107
0.740
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525758
Biotype: lincRNA
Gene id: ENSG00000254401
Gene Name: RP11-179A10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-329
0.011
2
6mer
338-363
0.006
4
6mer
395-417
0.004
3
6mer
191-215
0.004
1
6mer
950-973
0.002
0
6mer
698-716
0.001
Not Conserved
ADORA2A-AS1
hsa-miR-107
0.739
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000326341
Biotype: antisense
Gene id: ENSG00000178803
Gene Name: ADORA2A-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-88
0.007
0
7mer
68-88
0.007
0
7mer
139-164
0.006
1
7mer
166-184
0.005
1
6mer
1023-1037
0.002
2
6mer
1021-1037
0.001
2
KB-1592A4.15
hsa-miR-107
0.739
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000420508
Biotype: lincRNA
Gene id: ENSG00000197210
Gene Name: KB-1592A4.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2671-2686
0.010
1
6mer
4653-4669
0.003
1
6mer
643-662
0.003
1
6mer
2970-2993
0.002
1
6mer
625-651
0.002
1
6mer
2516-2529
0.002
1
6mer
3801-3817
0.001
1
7mer
3692-3712
0.001
1
6mer
2176-2198
0.001
0
6mer
3597-3619
0.001
Not Conserved
6mer
2932-2945
0.001
1
6mer
3690-3712
0.001
1
6mer
2445-2466
0.001
1
RP11-151A6.4
hsa-miR-107
0.738
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608779
Biotype: sense_intronic
Gene id: ENSG00000224356
Gene Name: RP11-151A6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-376
0.017
1
7mer
184-206
0.010
0
LINC00882
hsa-miR-107
0.738
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484698
Biotype: lincRNA
Gene id: ENSG00000242759
Gene Name: LINC00882
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-386
0.016
1
8mer
1859-1870
0.009
0
7mer
356-376
0.003
Not Conserved
RP11-785H5.1
hsa-miR-107
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544420
Biotype: lincRNA
Gene id: ENSG00000256537
Gene Name: RP11-785H5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-932
0.025
3
6mer
508-526
0.002
0
FAM66C
hsa-miR-107
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535567
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-49
0.028
1
RP11-359E3.4
hsa-miR-107
0.737
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608826
Biotype: antisense
Gene id: ENSG00000272631
Gene Name: RP11-359E3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5464-5476
0.010
1
9mer
927-939
0.010
1
7mer
1346-1366
0.003
1
7mer
3239-3263
0.003
0
6mer
2662-2674
0.001
1
RP11-443N24.2
hsa-miR-107
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536949
Biotype: lincRNA
Gene id: ENSG00000256686
Gene Name: RP11-443N24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
637-652
0.028
4
RP11-545G3.1
hsa-miR-107
0.737
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000493400
Biotype: lincRNA
Gene id: ENSG00000241449
Gene Name: RP11-545G3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-148
0.025
0
6mer
337-356
0.003
0
RP11-204N11.1
hsa-miR-107
0.736
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555187
Biotype: lincRNA
Gene id: ENSG00000258869
Gene Name: RP11-204N11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2923-2940
0.007
1
7mer
2920-2940
0.006
1
7mer
2917-2940
0.006
2
6mer
3001-3028
0.004
0
6mer
2634-2659
0.003
0
XLOC_004253
hsa-miR-107
0.736
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009837
Biotype: transcript isomorph
Gene id: XLOC_004253
Gene Name: XLOC_004253
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-290
0.027
6
TRAF3IP2-AS1
hsa-miR-107
0.736
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442928
Biotype: antisense
Gene id: ENSG00000231889
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-145
0.020
8
7mer
411-432
0.008
4
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