LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
XLOC_006242
hsa-miR-107
0.968
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014209
Biotype: transcript isomorph
Gene id: XLOC_006242
Gene Name: XLOC_006242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-61
0.060
1
6mer
1055-1068
0.007
1
AC022007.5
hsa-miR-107
0.968
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437616
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
190-209
0.016
0
6mer
494-519
0.013
0
6mer
496-519
0.013
0
6mer
193-209
0.012
0
6mer
254-274
0.012
0
AC012501.2
hsa-miR-107
0.968
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424322
Biotype: sense_overlapping
Gene id: ENSG00000227400
Gene Name: AC012501.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-117
0.054
5
7mer
208-221
0.013
1
AC002463.3
hsa-miR-107
0.966
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000453459
Biotype: lincRNA
Gene id: ENSG00000223646
Gene Name: AC002463.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1082-1099
0.051
6
6mer
940-956
0.012
9
6mer
154-170
0.002
0
AC004837.5
hsa-miR-107
0.966
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435766
Biotype: antisense
Gene id: ENSG00000228554
Gene Name: AC004837.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-254
0.065
2
RP11-514D23.3
hsa-miR-107
0.965
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602425
Biotype: lincRNA
Gene id: ENSG00000270058
Gene Name: RP11-514D23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-46
0.065
2
RP11-111A21.1
hsa-miR-107
0.965
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557197
Biotype: lincRNA
Gene id: ENSG00000258526
Gene Name: RP11-111A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-48
0.058
1
6mer
455-480
0.007
3
LINC00475
hsa-miR-107
0.965
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444476
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
38-48
0.020
0
6mer
50-76
0.016
0
6mer
22-46
0.016
0
6mer
137-152
0.013
0
RP11-958F21.3
hsa-miR-107
0.964
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578129
Biotype: lincRNA
Gene id: ENSG00000265552
Gene Name: RP11-958F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
593-618
0.065
7
RP5-945I17.2
hsa-miR-107
0.964
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527684
Biotype: lincRNA
Gene id: ENSG00000254669
Gene Name: RP5-945I17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-449
0.064
3
RP11-715G15.1
hsa-miR-107
0.962
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419168
Biotype: lincRNA
Gene id: ENSG00000237468
Gene Name: RP11-715G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-301
0.052
0
7mer
1420-1445
0.012
3
AC000403.4
hsa-miR-107
0.962
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613696
Biotype: lincRNA
Gene id: ENSG00000278727
Gene Name: AC000403.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-108
0.036
1
8mer
2889-2907
0.027
0
LOC441204
hsa-miR-107
0.961
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_015364.2
Biotype: lincRNA
Gene id: NR_015364.2 (gene)
Gene Name: LOC441204
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1559-1571
0.049
1
8mer
104-128
0.008
1
6mer
104-130
0.006
3
XLOC_006181
hsa-miR-107
0.960
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013542
Biotype: transcript isomorph
Gene id: XLOC_006181
Gene Name: XLOC_006181
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
396-415
0.063
1
RP3-323A16.1
hsa-miR-107
0.960
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
11253-11269
0.008
1
9mer
35767-35785
0.008
1
8mer
1188-1212
0.006
0
7mer
48985-49007
0.004
1
8mer
52422-52431
0.004
1
6mer
53568-53594
0.003
1
7mer
800-822
0.003
0
6mer
45139-45153
0.002
3
7mer
14298-14323
0.002
0
6mer
52978-52989
0.002
0
6mer
37070-37093
0.002
7
7mer
38774-38796
0.002
1
7mer
47341-47353
0.002
1
7mer
38799-38817
0.002
1
6mer
15277-15292
0.002
1
6mer
16956-16969
0.002
3
6mer
43292-43316
0.002
1
7mer
39923-39937
0.001
Not Conserved
6mer
24264-24280
0.001
0
6mer
52210-52228
0.001
0
6mer
3586-3605
0.001
1
6mer
5557-5579
0.001
Not Conserved
7mer
34009-34036
0.001
Not Conserved
6mer
39930-39939
0.001
1
6mer
34009-34033
0.001
Not Conserved
6mer
14360-14384
0.000
0
XLOC_005521
hsa-miR-107
0.959
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012006
Biotype: transcript isomorph
Gene id: XLOC_005521
Gene Name: XLOC_005521
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-567
0.056
2
6mer
296-314
0.007
1
STAG3L5P-PVRIG2P-PILRB
hsa-miR-107
0.958
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036569.1
Biotype: sense
Gene id: NR_036569.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-450
0.021
0
9mer
3662-3678
0.019
0
7mer
786-810
0.009
1
6mer
1309-1334
0.004
4
7mer
1098-1123
0.002
2
7mer
2542-2564
0.001
2
6mer
1601-1616
0.001
1
6mer
2008-2032
0.001
0
6mer
2562-2584
0.001
2
7mer
2549-2576
0.001
1
6mer
2549-2566
0.001
2
6mer
1633-1655
0.000
1
6mer
1733-1751
0.000
0
6mer
1633-1653
0.000
0
XLOC_008895
hsa-miR-107
0.958
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018569
Biotype: transcript isomorph
Gene id: XLOC_008895
Gene Name: XLOC_008895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1116-1135
0.033
2
9mer
188-209
0.024
1
6mer
596-618
0.002
2
6mer
594-618
0.002
3
RP11-114G22.1
hsa-miR-107
0.956
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000590955
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-134
0.015
4
6mer
125-146
0.013
7
7mer
177-190
0.012
1
6mer
200-225
0.011
4
6mer
196-223
0.009
4
AC002463.3
hsa-miR-107
0.955
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110158.1
Biotype: lincRNA
Gene id: NR_110158.1 (gene)
Gene Name: AC002463.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1079-1096
0.047
6
6mer
937-953
0.012
9
6mer
151-167
0.002
0
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