LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
XLOC_005077
hsa-miR-107
0.746
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010550
Biotype: transcript isomorph
Gene id: XLOC_005077
Gene Name: XLOC_005077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
310-328
0.011
0
7mer
652-669
0.007
1
6mer
6280-6297
0.005
5
7mer
1605-1624
0.004
1
6mer
1745-1760
0.002
1
6mer
4408-4428
0.001
0
RP11-335O4.1
hsa-miR-107
0.746
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540761
Biotype: lincRNA
Gene id: ENSG00000256077
Gene Name: RP11-335O4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-125
0.028
2
RP11-78F17.1
hsa-miR-107
0.746
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581556
Biotype: lincRNA
Gene id: ENSG00000263551
Gene Name: RP11-78F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-406
0.014
Not Conserved
7mer
46-72
0.008
Not Conserved
7mer
46-69
0.006
Not Conserved
XLOC_007640
hsa-miR-107
0.745
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016745
Biotype: transcript isomorph
Gene id: XLOC_007640
Gene Name: XLOC_007640
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
412-438
0.012
0
6mer
424-438
0.009
4
7mer
426-443
0.007
1
RP11-96D1.11
hsa-miR-107
0.745
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571197
Biotype: antisense
Gene id: ENSG00000262160
Gene Name: RP11-96D1.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2779-2798
0.013
4
8mer
681-701
0.009
3
6mer
774-785
0.006
7
DNM3OS
hsa-miR-107
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417354
Biotype: antisense
Gene id: ENSG00000230630
Gene Name: DNM3OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
644-670
0.027
1
6mer
2853-2868
0.002
1
LOC100289333
hsa-miR-107
0.745
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_104179.1
Biotype: lincRNA
Gene id: NR_104179.1 (gene)
Gene Name: LOC100289333
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-80
0.028
0
LOC101593348
hsa-miR-107
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_103497.1
Biotype: antisense
Gene id: NR_103497.1 (gene)
Gene Name: LOC101593348
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1659-1678
0.021
4
9mer
831-853
0.007
0
FLJ22447
hsa-miR-107
0.745
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000229465
Biotype: lincRNA
Gene id: ENSG00000232774
Gene Name: FLJ22447
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1143-1167
0.018
0
7mer
61-87
0.008
3
6mer
397-414
0.002
0
LINC00396
hsa-miR-107
0.744
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000411690
Biotype: lincRNA
Gene id: ENSG00000231428
Gene Name: LINC00396
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-113
0.016
Not Conserved
6mer
26-46
0.008
1
6mer
178-196
0.005
1
CTD-2666L21.1
hsa-miR-107
0.744
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000415793
Biotype: lincRNA
Gene id: ENSG00000234773
Gene Name: CTD-2666L21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-80
0.028
0
XLOC_013687
hsa-miR-107
0.744
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027885
Biotype: transcript isomorph
Gene id: XLOC_013687
Gene Name: XLOC_013687
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
556-578
0.023
1
6mer
1770-1792
0.005
1
RP11-96P7.1
hsa-miR-107
0.744
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000512279
Biotype: lincRNA
Gene id: ENSG00000250514
Gene Name: RP11-96P7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
971-985
0.024
4
6mer
548-563
0.003
3
6mer
1019-1038
0.001
4
LOC101928882
hsa-miR-107
0.744
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_109986.1
Biotype: sense
Gene id: NR_109986.1 (gene)
Gene Name: LOC101928882
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
302-326
0.011
4
6mer
2825-2847
0.004
0
7mer
2066-2090
0.004
2
6mer
752-773
0.003
2
6mer
2200-2209
0.002
1
6mer
1618-1635
0.002
1
6mer
750-773
0.001
2
XLOC_012653
hsa-miR-107
0.744
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026308
Biotype: transcript isomorph
Gene id: XLOC_012653
Gene Name: XLOC_012653
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-163
0.028
1
RP1-60O19.1
hsa-miR-107
0.743
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602621
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2049-2073
0.028
0
LINC00487
hsa-miR-107
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412528
Biotype: lincRNA
Gene id: ENSG00000205837
Gene Name: LINC00487
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-315
0.028
0
TEN1-CDK3
hsa-miR-107
0.743
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037709.1
Biotype: sense
Gene id: NR_037709.1 (gene)
Gene Name: TEN1-CDK3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
297-310
0.014
9
6mer
2152-2170
0.004
11
6mer
2719-2736
0.002
1
6mer
1972-1999
0.002
3
6mer
2775-2795
0.002
3
6mer
2775-2797
0.002
2
6mer
2152-2172
0.001
7
LINC01506
hsa-miR-107
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446290
Biotype: lincRNA
Gene id: ENSG00000234506
Gene Name: LINC01506
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-75
0.028
1
AC003665.1
hsa-miR-107
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000451140
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
974-994
0.028
3
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