LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
LL22NC03-22D1.1
hsa-miR-107
0.752
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-279
0.009
1
7mer
23720-23740
0.008
2
7mer
7617-7638
0.005
1
6mer
16915-16940
0.002
1
7mer
23812-23834
0.002
1
6mer
25606-25632
0.001
1
6mer
26607-26631
0.001
1
6mer
26924-26937
0.001
1
6mer
11515-11533
0.001
Not Conserved
CTD-2337I7.1
hsa-miR-107
0.752
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526091
Biotype: lincRNA
Gene id: ENSG00000255345
Gene Name: CTD-2337I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
109-135
0.029
0
LOC100506990
hsa-miR-107
0.751
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_040092.1
Biotype: lincRNA
Gene id: NR_040092.1 (gene)
Gene Name: LOC100506990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2048-2072
0.029
0
XLOC_005214
hsa-miR-107
0.751
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011750
Biotype: transcript isomorph
Gene id: XLOC_005214
Gene Name: XLOC_005214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1746-1768
0.018
0
8mer
1903-1928
0.011
0
RP11-819C21.1
hsa-miR-107
0.751
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561746
Biotype: lincRNA
Gene id: ENSG00000261098
Gene Name: RP11-819C21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-64
0.029
2
SIRPG-AS1
hsa-miR-107
0.751
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000456177
Biotype: antisense
Gene id: ENSG00000237914
Gene Name: SIRPG-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2496-2518
0.019
0
8mer
779-800
0.007
1
6mer
2016-2034
0.002
0
NUTM2B-AS1
hsa-miR-107
0.751
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619625
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6266-6286
0.017
Not Conserved
7mer
7490-7504
0.007
0
6mer
3911-3937
0.003
2
6mer
5982-5999
0.002
1
XLOC_010799
hsa-miR-107
0.750
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022470
Biotype: transcript isomorph
Gene id: XLOC_010799
Gene Name: XLOC_010799
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
248-271
0.014
13
6mer
8-31
0.010
11
7mer
562-581
0.005
1
PCAT18
hsa-miR-107
0.750
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579458
Biotype: lincRNA
Gene id: ENSG00000265369
Gene Name: PCAT18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1929-1941
0.024
2
6mer
2143-2155
0.004
0
INO80B-WBP1
hsa-miR-107
0.749
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037849.1
Biotype: sense
Gene id: NR_037849.1 (gene)
Gene Name: INO80B-WBP1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-734
0.009
7
6mer
1226-1241
0.005
12
6mer
602-620
0.004
3
6mer
1279-1305
0.003
7
7mer
670-679
0.003
2
6mer
1200-1223
0.002
5
6mer
1004-1021
0.002
5
RP11-1055B8.8
hsa-miR-107
0.749
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572590
Biotype: antisense
Gene id: ENSG00000263271
Gene Name: RP11-1055B8.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
127-146
0.009
9
7mer
376-393
0.005
1
7mer
373-391
0.004
1
7mer
34-56
0.004
1
7mer
370-393
0.003
0
6mer
32-56
0.003
2
XLOC_011480
hsa-miR-107
0.749
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024123
Biotype: transcript isomorph
Gene id: XLOC_011480
Gene Name: XLOC_011480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-105
0.021
3
7mer
915-934
0.008
1
XLOC_009249
hsa-miR-107
0.749
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019972
Biotype: transcript isomorph
Gene id: XLOC_009249
Gene Name: XLOC_009249
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
987-1005
0.029
2
RP3-399L15.3
hsa-miR-107
0.748
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000519629
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-258
0.014
1
7mer
526-544
0.011
2
6mer
526-541
0.004
1
XLOC_011167
hsa-miR-107
0.748
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023298
Biotype: transcript isomorph
Gene id: XLOC_011167
Gene Name: XLOC_011167
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2558-2575
0.011
1
7mer
2519-2542
0.009
1
7mer
1747-1762
0.006
2
6mer
389-406
0.003
0
FAR2P2
hsa-miR-107
0.748
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046258.1
Biotype: lincRNA
Gene id: NR_046258.1 (gene)
Gene Name: FAR2P2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
276-303
0.027
Not Conserved
6mer
1803-1820
0.001
Not Conserved
RP3-405J10.3
hsa-miR-107
0.748
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552061
Biotype: sense_intronic
Gene id: ENSG00000257298
Gene Name: RP3-405J10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3380-3396
0.007
1
7mer
3841-3855
0.005
1
6mer
359-380
0.004
3
7mer
3465-3489
0.004
1
6mer
910-932
0.003
1
7mer
361-385
0.002
0
6mer
364-385
0.002
0
6mer
1688-1702
0.001
1
PCAT19
hsa-miR-107
0.748
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3422-3434
0.016
1
7mer
2479-2502
0.007
0
6mer
2330-2342
0.006
1
RP11-521C20.5
hsa-miR-107
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616620
Biotype: lincRNA
Gene id: ENSG00000275636
Gene Name: RP11-521C20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-314
0.028
0
XLOC_008658
hsa-miR-107
0.746
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018379
Biotype: transcript isomorph
Gene id: XLOC_008658
Gene Name: XLOC_008658
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-128
0.028
3
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