LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
XLOC_008408
hsa-miR-107
0.756
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018133
Biotype: transcript isomorph
Gene id: XLOC_008408
Gene Name: XLOC_008408
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-309
0.029
3
RP11-4O1.2
hsa-miR-107
0.755
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000568421
Biotype: sense_overlapping
Gene id: ENSG00000259953
Gene Name: RP11-4O1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-105
0.021
2
7mer
691-705
0.003
4
6mer
694-705
0.003
3
6mer
689-705
0.003
4
AC005154.6
hsa-miR-107
0.755
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584621
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
374-395
0.008
1
7mer
2039-2060
0.008
1
7mer
891-913
0.004
1
6mer
372-395
0.004
1
7mer
888-905
0.002
1
6mer
1302-1314
0.001
1
6mer
1300-1314
0.001
0
CTD-3065J16.6
hsa-miR-107
0.755
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000561181
Biotype: antisense
Gene id: ENSG00000204791
Gene Name: CTD-3065J16.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
82-96
0.004
5
7mer
159-175
0.004
3
7mer
159-181
0.003
3
7mer
159-178
0.003
3
6mer
307-327
0.003
2
6mer
862-883
0.002
3
6mer
650-670
0.002
4
6mer
671-694
0.002
4
7mer
149-172
0.002
Not Conserved
6mer
149-169
0.001
Not Conserved
7mer
650-673
0.001
3
6mer
671-696
0.001
3
RP3-399L15.3
hsa-miR-107
0.755
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000522844
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
529-544
0.029
4
FAR2P2
hsa-miR-107
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046259.1
Biotype: lincRNA
Gene id: NR_046259.1 (gene)
Gene Name: FAR2P2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
276-303
0.028
Not Conserved
6mer
1803-1820
0.002
Not Conserved
AC004951.6
hsa-miR-107
0.754
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447643
Biotype: lincRNA
Gene id: ENSG00000228434
Gene Name: AC004951.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1346-1373
0.015
0
6mer
117-144
0.014
0
TEX41
hsa-miR-107
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420472
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
636-658
0.029
1
XLOC_012281
hsa-miR-107
0.754
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025462
Biotype: transcript isomorph
Gene id: XLOC_012281
Gene Name: XLOC_012281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3655-3677
0.016
0
6mer
129-151
0.005
1
6mer
657-667
0.003
0
6mer
3321-3335
0.003
1
6mer
3330-3354
0.002
0
RP11-37B2.1
hsa-miR-107
0.754
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000621883
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2353-2373
0.018
3
7mer
3190-3201
0.007
1
6mer
1201-1225
0.002
1
6mer
1599-1610
0.002
1
RP11-350F4.2
hsa-miR-107
0.754
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553202
Biotype: lincRNA
Gene id: ENSG00000257742
Gene Name: RP11-350F4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4366-4379
0.029
4
RP11-436F21.1
hsa-miR-107
0.753
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421507
Biotype: lincRNA
Gene id: ENSG00000226566
Gene Name: RP11-436F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
226-248
0.029
Not Conserved
RP11-260G13.1
hsa-miR-107
0.753
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000549515
Biotype: lincRNA
Gene id: ENSG00000258107
Gene Name: RP11-260G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-108
0.029
12
XLOC_010529
hsa-miR-107
0.752
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021936
Biotype: transcript isomorph
Gene id: XLOC_010529
Gene Name: XLOC_010529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-131
0.029
1
ADORA2A-AS1
hsa-miR-107
0.752
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_028484.1
Biotype: antisense
Gene id: NR_028484.1 (gene)
Gene Name: ADORA2A-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-84
0.007
0
7mer
135-160
0.007
1
7mer
64-84
0.007
0
7mer
162-180
0.005
1
6mer
1019-1033
0.002
2
6mer
1017-1033
0.001
2
XLOC_009813
hsa-miR-107
0.752
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020482
Biotype: transcript isomorph
Gene id: XLOC_009813
Gene Name: XLOC_009813
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
352-370
0.015
5
7mer
757-775
0.014
7
VIM-AS1
hsa-miR-107
0.752
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000605833
Biotype: antisense
Gene id: ENSG00000229124
Gene Name: VIM-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
730-754
0.017
12
6mer
763-777
0.010
11
6mer
570-584
0.002
5
RP11-678G14.3
hsa-miR-107
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596996
Biotype: lincRNA
Gene id: ENSG00000268555
Gene Name: RP11-678G14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
456-472
0.018
0
9mer
711-730
0.011
0
RP11-473C18.3
hsa-miR-107
0.752
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565685
Biotype: antisense
Gene id: ENSG00000261687
Gene Name: RP11-473C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-111
0.029
2
RP5-1023B21.1
hsa-miR-107
0.752
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000596207
Biotype: lincRNA
Gene id: ENSG00000267857
Gene Name: RP5-1023B21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
527-541
0.008
4
7mer
530-555
0.006
3
7mer
524-541
0.006
3
6mer
522-541
0.005
3
6mer
533-559
0.004
2
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