LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
RBMS3-AS3
hsa-miR-107
0.761
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_109804.1
Biotype: lincRNA
Gene id: NR_109804.1 (gene)
Gene Name: RBMS3-AS3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
854-874
0.016
8
6mer
702-718
0.005
1
6mer
786-798
0.005
4
6mer
600-626
0.003
1
RP11-406D1.2
hsa-miR-107
0.760
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525309
Biotype: lincRNA
Gene id: ENSG00000255094
Gene Name: RP11-406D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
618-631
0.030
0
TP73-AS1
hsa-miR-107
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418088
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2866-2886
0.021
0
6mer
592-614
0.003
1
7mer
2385-2407
0.002
1
6mer
2415-2432
0.002
1
6mer
2388-2407
0.001
2
XLOC_003249
hsa-miR-107
0.760
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007264
Biotype: transcript isomorph
Gene id: XLOC_003249
Gene Name: XLOC_003249
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-275
0.030
1
TRAF3IP2-AS1
hsa-miR-107
0.760
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607066
Biotype: antisense
Gene id: ENSG00000231889
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-31
0.022
8
7mer
297-318
0.008
4
LOC285762
hsa-miR-107
0.760
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_046100.1
Biotype: lincRNA
Gene id: NR_046100.1 (gene)
Gene Name: LOC285762
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3272-3284
0.021
1
8mer
744-770
0.005
1
6mer
868-890
0.004
3
LINC00665
hsa-miR-107
0.758
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585356
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-339
0.029
1
TP73-AS1
hsa-miR-107
0.758
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_033712.1
Biotype: antisense
Gene id: NR_033712.1 (gene)
Gene Name: TP73-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2866-2886
0.021
0
6mer
592-614
0.003
1
7mer
2385-2407
0.002
1
6mer
2415-2432
0.001
1
6mer
2388-2407
0.001
2
XLOC_010664
hsa-miR-107
0.758
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022059
Biotype: transcript isomorph
Gene id: XLOC_010664
Gene Name: XLOC_010664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-140
0.018
6
7mer
132-150
0.012
6
XLOC_013734
hsa-miR-107
0.758
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028377
Biotype: transcript isomorph
Gene id: XLOC_013734
Gene Name: XLOC_013734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-147
0.022
1
7mer
489-507
0.007
1
XLOC_013995
hsa-miR-107
0.757
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3493-3515
0.005
0
6mer
3734-3751
0.005
0
7mer
3685-3703
0.004
0
7mer
3014-3036
0.004
0
7mer
2438-2456
0.004
0
7mer
2870-2888
0.002
Not Conserved
6mer
3398-3418
0.002
0
6mer
3446-3467
0.001
Not Conserved
6mer
2775-2789
0.001
0
LINC00665
hsa-miR-107
0.757
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590657
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-339
0.029
1
GRM7-AS3
hsa-miR-107
0.757
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000449158
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-342
0.029
0
LINC01105
hsa-miR-107
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456327
Biotype: lincRNA
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
797-817
0.029
3
GS1-124K5.3
hsa-miR-107
0.757
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450353
Biotype: lincRNA
Gene id: ENSG00000223473
Gene Name: GS1-124K5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
70-94
0.015
1
6mer
259-269
0.014
1
XLOC_002948
hsa-miR-107
0.757
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007049
Biotype: transcript isomorph
Gene id: XLOC_002948
Gene Name: XLOC_002948
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-303
0.016
7
8mer
1192-1211
0.009
1
6mer
675-698
0.003
5
LOC90784
hsa-miR-107
0.756
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026984.1
Biotype: sense
Gene id: NR_026984.1 (gene)
Gene Name: LOC90784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
532-550
0.015
1
6mer
108-125
0.006
1
7mer
1049-1069
0.005
2
7mer
1539-1553
0.003
1
RP11-673E1.1
hsa-miR-107
0.756
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505000
Biotype: lincRNA
Gene id: ENSG00000251600
Gene Name: RP11-673E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
515-537
0.029
1
HCFC1-AS1
hsa-miR-107
0.756
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000438219
Biotype: antisense
Gene id: ENSG00000235802
Gene Name: HCFC1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-196
0.029
1
RP5-821D11.7
hsa-miR-107
0.756
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000333487
Biotype: antisense
Gene id: ENSG00000184068
Gene Name: RP5-821D11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2902-2926
0.011
0
6mer
2939-2958
0.009
2
6mer
2941-2958
0.007
3
6mer
356-379
0.002
1
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