LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
SNX29P2
hsa-miR-107
0.772
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000604430
Biotype: lincRNA
Gene id: ENSG00000198106
Gene Name: SNX29P2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
831-845
0.019
6
7mer
113-136
0.008
0
7mer
217-238
0.003
1
6mer
878-894
0.001
1
LINC00630
hsa-miR-107
0.771
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000431616
Biotype: lincRNA
Gene id: ENSG00000223546
Gene Name: LINC00630
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-217
0.031
1
RP11-505C13.1
hsa-miR-107
0.771
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453455
Biotype: lincRNA
Gene id: ENSG00000230030
Gene Name: RP11-505C13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-193
0.031
3
AC003665.1
hsa-miR-107
0.771
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000411573
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
463-483
0.027
3
6mer
1092-1109
0.002
1
6mer
886-911
0.001
0
AC084149.1
hsa-miR-107
0.771
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438443
Biotype: lincRNA
Gene id: ENSG00000230968
Gene Name: AC084149.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-451
0.031
2
XLOC_009416
hsa-miR-107
0.771
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019616
Biotype: transcript isomorph
Gene id: XLOC_009416
Gene Name: XLOC_009416
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-187
0.021
0
7mer
139-166
0.010
1
LINC01054
hsa-miR-107
0.771
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000446989
Biotype: antisense
Gene id: ENSG00000229723
Gene Name: LINC01054
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
487-508
0.031
1
LINC00487
hsa-miR-107
0.771
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424179
Biotype: lincRNA
Gene id: ENSG00000205837
Gene Name: LINC00487
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-589
0.031
0
RP11-179A7.2
hsa-miR-107
0.770
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000452207
Biotype: lincRNA
Gene id: ENSG00000232986
Gene Name: RP11-179A7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-203
0.030
1
RP4-737E23.2
hsa-miR-107
0.770
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613502
Biotype: lincRNA
Gene id: ENSG00000230387
Gene Name: RP4-737E23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1431-1449
0.012
0
7mer
1838-1864
0.006
0
6mer
1926-1951
0.005
0
6mer
79-99
0.004
1
6mer
1840-1866
0.003
0
6mer
1991-2016
0.002
0
LINC01435
hsa-miR-107
0.770
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601505
Biotype: lincRNA
Gene id: ENSG00000229981
Gene Name: LINC01435
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-521
0.020
1
6mer
600-626
0.006
2
6mer
569-579
0.005
1
XLOC_004712
hsa-miR-107
0.770
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009219
Biotype: transcript isomorph
Gene id: XLOC_004712
Gene Name: XLOC_004712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-241
0.015
1
6mer
2862-2877
0.007
2
6mer
2569-2593
0.004
2
7mer
2478-2498
0.002
Not Conserved
6mer
2502-2519
0.001
1
7mer
2504-2519
0.001
Not Conserved
6mer
1336-1351
0.001
0
RP11-539I5.1
hsa-miR-107
0.769
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000453491
Biotype: antisense
Gene id: ENSG00000225302
Gene Name: RP11-539I5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4822-4844
0.021
8
6mer
621-639
0.004
1
7mer
2176-2203
0.003
1
7mer
3302-3329
0.002
0
6mer
2169-2188
0.000
0
SUCLG2-AS1
hsa-miR-107
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000464420
Biotype: lincRNA
Gene id: ENSG00000241316
Gene Name: SUCLG2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
745-770
0.026
2
6mer
635-645
0.004
1
RP3-399L15.3
hsa-miR-107
0.768
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000520891
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
378-393
0.030
4
LINC01506
hsa-miR-107
0.767
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000432148
Biotype: lincRNA
Gene id: ENSG00000234506
Gene Name: LINC01506
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-75
0.030
1
RP11-15B17.1
hsa-miR-107
0.767
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507494
Biotype: antisense
Gene id: ENSG00000245322
Gene Name: RP11-15B17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
665-683
0.008
5
8mer
375-402
0.007
Not Conserved
6mer
179-199
0.007
6
6mer
589-599
0.004
0
7mer
385-405
0.004
0
XLOC_012897
hsa-miR-107
0.767
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026222
Biotype: transcript isomorph
Gene id: XLOC_012897
Gene Name: XLOC_012897
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
953-962
0.018
0
7mer
580-602
0.009
1
8mer
1113-1137
0.004
0
RP11-344E13.3
hsa-miR-107
0.767
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584433
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
241-265
0.016
0
6mer
200-221
0.014
0
XLOC_002247
hsa-miR-107
0.767
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004368
Biotype: transcript isomorph
Gene id: XLOC_002247
Gene Name: XLOC_002247
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-89
0.017
2
6mer
97-121
0.008
6
7mer
94-110
0.005
3
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