LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
LINC01020
hsa-miR-107
0.779
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508201
Biotype: lincRNA
Gene id: ENSG00000215231
Gene Name: LINC01020
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1674-1685
0.018
1
7mer
177-198
0.006
0
6mer
1290-1310
0.003
1
6mer
368-387
0.003
1
RP11-227H15.4
hsa-miR-107
0.778
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450995
Biotype: antisense
Gene id: ENSG00000229261
Gene Name: RP11-227H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
618-640
0.026
2
6mer
782-798
0.005
3
AC012501.2
hsa-miR-107
0.777
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454312
Biotype: sense_overlapping
Gene id: ENSG00000227400
Gene Name: AC012501.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-308
0.027
5
6mer
440-466
0.004
Not Conserved
TINCR
hsa-miR-107
0.777
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000448587
Biotype: lincRNA
Gene id: ENSG00000223573
Gene Name: TINCR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-190
0.006
1
7mer
3545-3570
0.006
3
7mer
3380-3398
0.004
4
6mer
500-522
0.004
1
7mer
3383-3408
0.004
3
6mer
417-442
0.003
3
6mer
3548-3573
0.002
2
7mer
1776-1802
0.002
0
6mer
1933-1952
0.001
0
XLOC_010681
hsa-miR-107
0.777
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022079
Biotype: transcript isomorph
Gene id: XLOC_010681
Gene Name: XLOC_010681
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
214-230
0.031
1
RP11-397A16.1
hsa-miR-107
0.777
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592936
Biotype: lincRNA
Gene id: ENSG00000267284
Gene Name: RP11-397A16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
501-523
0.017
1
7mer
501-520
0.014
1
RP11-114H23.1
hsa-miR-107
0.777
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552466
Biotype: lincRNA
Gene id: ENSG00000258077
Gene Name: RP11-114H23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-167
0.011
2
6mer
141-155
0.008
3
8mer
284-308
0.005
0
6mer
506-532
0.005
0
6mer
282-305
0.003
1
RP11-586K2.1
hsa-miR-107
0.775
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523254
Biotype: antisense
Gene id: ENSG00000253553
Gene Name: RP11-586K2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
466-489
0.019
5
6mer
132-150
0.006
6
6mer
21-39
0.006
5
RP3-399L15.3
hsa-miR-107
0.775
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449620
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-366
0.031
4
SAP30L-AS1
hsa-miR-107
0.774
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519727
Biotype: antisense
Gene id: ENSG00000245275
Gene Name: SAP30L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-83
0.031
Not Conserved
RP11-398A8.4
hsa-miR-107
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610188
Biotype: lincRNA
Gene id: ENSG00000273461
Gene Name: RP11-398A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
33-57
0.031
1
RP11-785H5.1
hsa-miR-107
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000622602
Biotype: lincRNA
Gene id: ENSG00000256537
Gene Name: RP11-785H5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
868-891
0.028
3
6mer
467-485
0.002
0
LINC00663
hsa-miR-107
0.774
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590092
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
254-276
0.016
1
7mer
592-608
0.005
0
6mer
595-608
0.004
0
6mer
590-608
0.003
0
6mer
858-873
0.002
Not Conserved
RP11-104E19.1
hsa-miR-107
0.773
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557736
Biotype: antisense
Gene id: ENSG00000258657
Gene Name: RP11-104E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-456
0.020
1
7mer
208-230
0.008
Not Conserved
6mer
270-288
0.003
0
RP11-642D21.2
hsa-miR-107
0.773
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520588
Biotype: antisense
Gene id: ENSG00000253420
Gene Name: RP11-642D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-201
0.020
0
6mer
213-231
0.011
9
TRPM2-AS
hsa-miR-107
0.773
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456880
Biotype: antisense
Gene id: ENSG00000230061
Gene Name: TRPM2-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1251-1277
0.013
1
8mer
947-964
0.010
1
6mer
1701-1716
0.005
1
6mer
1158-1173
0.002
1
6mer
1156-1173
0.001
1
XLOC_012582
hsa-miR-107
0.773
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025772
Biotype: transcript isomorph
Gene id: XLOC_012582
Gene Name: XLOC_012582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1369-1392
0.010
1
7mer
340-357
0.008
0
7mer
361-386
0.007
0
6mer
658-677
0.005
0
LINC01029
hsa-miR-107
0.772
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583106
Biotype: lincRNA
Gene id: ENSG00000265843
Gene Name: LINC01029
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
748-757
0.012
0
7mer
375-397
0.011
1
6mer
1217-1227
0.005
1
8mer
908-932
0.003
0
CTD-2666L21.1
hsa-miR-107
0.772
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000426044
Biotype: lincRNA
Gene id: ENSG00000234773
Gene Name: CTD-2666L21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-78
0.028
0
6mer
384-410
0.002
0
6mer
427-447
0.001
1
RP11-579D7.2
hsa-miR-107
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548742
Biotype: antisense
Gene id: ENSG00000257653
Gene Name: RP11-579D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
653-677
0.031
5
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