LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
AC007392.3
hsa-miR-107
0.784
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412944
Biotype: lincRNA
Gene id: ENSG00000232046
Gene Name: AC007392.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-485
0.020
6
7mer
429-442
0.012
5
RP11-10L12.4
hsa-miR-107
0.783
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501133
Biotype: antisense
Gene id: ENSG00000246560
Gene Name: RP11-10L12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-559
0.032
1
LINC00900
hsa-miR-107
0.782
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602803
Biotype: lincRNA
Gene id: ENSG00000246100
Gene Name: LINC00900
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-327
0.032
9
XLOC_003405
hsa-miR-107
0.782
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006771
Biotype: transcript isomorph
Gene id: XLOC_003405
Gene Name: XLOC_003405
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-254
0.020
0
6mer
9443-9459
0.004
0
7mer
456-483
0.004
0
8mer
1045-1072
0.001
Not Conserved
6mer
8315-8341
0.001
0
6mer
3125-3142
0.001
Not Conserved
RP3-399L15.3
hsa-miR-107
0.781
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421891
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-114
0.024
4
7mer
382-400
0.005
2
6mer
382-397
0.003
1
XLOC_009303
hsa-miR-107
0.781
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019502
Biotype: transcript isomorph
Gene id: XLOC_009303
Gene Name: XLOC_009303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-522
0.031
1
OVCH1-AS1
hsa-miR-107
0.781
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550906
Biotype: antisense
Gene id: ENSG00000257599
Gene Name: OVCH1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-265
0.016
2
8mer
324-345
0.016
2
PKNOX2-AS1
hsa-miR-107
0.781
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532316
Biotype: lincRNA
Gene id: ENSG00000254880
Gene Name: PKNOX2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-42
0.024
4
6mer
38-55
0.008
2
RP11-363N22.3
hsa-miR-107
0.780
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000615314
Biotype: retained_intron
Gene id: ENSG00000205740
Gene Name: RP11-363N22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-751
0.013
2
8mer
1152-1172
0.010
1
6mer
60-74
0.006
0
6mer
2377-2394
0.002
Not Conserved
KIAA1875
hsa-miR-107
0.780
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_024207.1
Biotype: sense
Gene id: NR_024207.1 (gene)
Gene Name: KIAA1875
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2100-2116
0.003
9
6mer
100-122
0.003
2
6mer
434-458
0.003
3
7mer
1424-1436
0.003
4
6mer
604-630
0.002
5
6mer
809-820
0.002
3
6mer
3237-3261
0.002
3
6mer
3918-3936
0.001
2
7mer
637-659
0.001
1
6mer
707-727
0.001
2
6mer
1916-1933
0.001
4
6mer
4043-4063
0.001
8
6mer
6251-6267
0.001
0
6mer
4645-4663
0.001
2
6mer
637-656
0.001
1
6mer
1542-1558
0.001
3
7mer
1925-1951
0.001
1
6mer
2105-2118
0.001
8
6mer
4142-4164
0.001
1
6mer
4248-4268
0.001
0
RP11-626G11.4
hsa-miR-107
0.780
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568032
Biotype: lincRNA
Gene id: ENSG00000260430
Gene Name: RP11-626G11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
777-800
0.031
2
MIR202HG
hsa-miR-107
0.780
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000300167
Biotype: antisense
Gene id: ENSG00000166917
Gene Name: MIR202HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-41
0.016
Not Conserved
7mer
20-41
0.007
1
7mer
17-41
0.006
0
6mer
264-284
0.002
0
NDUFA6-AS1
hsa-miR-107
0.779
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000451451
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
579-592
0.011
2
7mer
575-589
0.008
3
9mer
329-351
0.005
0
6mer
409-428
0.004
0
6mer
349-372
0.002
0
RP11-398A8.4
hsa-miR-107
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608555
Biotype: lincRNA
Gene id: ENSG00000273461
Gene Name: RP11-398A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
33-57
0.031
1
AFAP1-AS1
hsa-miR-107
0.779
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608442
Biotype: antisense
Gene id: ENSG00000272620
Gene Name: AFAP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5737-5760
0.015
2
7mer
3405-3425
0.003
1
6mer
829-840
0.003
1
7mer
2109-2132
0.003
Not Conserved
6mer
1061-1074
0.002
2
6mer
1353-1366
0.002
1
6mer
5994-6010
0.002
0
6mer
1738-1759
0.001
0
6mer
5008-5028
0.001
1
6mer
2149-2173
0.001
2
XLOC_011494
hsa-miR-107
0.779
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024132
Biotype: transcript isomorph
Gene id: XLOC_011494
Gene Name: XLOC_011494
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-80
0.031
1
MIR4313
hsa-miR-107
0.779
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2437-2456
0.011
1
7mer
1211-1231
0.007
1
6mer
1214-1238
0.004
0
6mer
1617-1640
0.003
0
6mer
1588-1613
0.003
1
6mer
1405-1429
0.003
0
RP11-430L3.1
hsa-miR-107
0.779
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524858
Biotype: lincRNA
Gene id: ENSG00000254819
Gene Name: RP11-430L3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
109-134
0.025
1
6mer
118-140
0.007
0
CTD-3148I10.15
hsa-miR-107
0.779
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595815
Biotype: processed_transcript
Gene id: ENSG00000273189
Gene Name: CTD-3148I10.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-645
0.006
5
7mer
97-123
0.006
2
7mer
115-126
0.006
3
7mer
115-129
0.004
3
7mer
747-765
0.003
1
6mer
625-647
0.003
6
7mer
643-666
0.003
5
XLOC_010811
hsa-miR-107
0.779
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022976
Biotype: transcript isomorph
Gene id: XLOC_010811
Gene Name: XLOC_010811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
912-938
0.025
1
6mer
2129-2154
0.006
3
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