LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
AP000708.1
hsa-miR-107
0.790
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527818
Biotype: antisense
Gene id: ENSG00000255537
Gene Name: AP000708.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3408-3417
0.032
1
RP11-1026M7.2
hsa-miR-107
0.790
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502515
Biotype: antisense
Gene id: ENSG00000249109
Gene Name: RP11-1026M7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1078-1099
0.029
Not Conserved
6mer
120-144
0.003
0
RP4-742J24.2
hsa-miR-107
0.790
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000439529
Biotype: antisense
Gene id: ENSG00000236526
Gene Name: RP4-742J24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1554-1570
0.015
12
7mer
1539-1558
0.006
2
7mer
1656-1683
0.005
5
7mer
1536-1558
0.004
3
6mer
1129-1153
0.003
2
RP11-212I21.2
hsa-miR-107
0.790
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565307
Biotype: lincRNA
Gene id: ENSG00000260135
Gene Name: RP11-212I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
284-311
0.025
3
6mer
133-156
0.004
1
6mer
305-322
0.003
0
RP11-380D23.1
hsa-miR-107
0.789
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503998
Biotype: antisense
Gene id: ENSG00000250511
Gene Name: RP11-380D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1071-1093
0.026
3
6mer
177-199
0.006
3
RP11-138I1.4
hsa-miR-107
0.789
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583934
Biotype: antisense
Gene id: ENSG00000265401
Gene Name: RP11-138I1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
128-144
0.020
14
6mer
356-378
0.012
12
RP11-20J15.3
hsa-miR-107
0.789
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000452578
Biotype: lincRNA
Gene id: ENSG00000229116
Gene Name: RP11-20J15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
680-699
0.011
1
6mer
524-542
0.011
1
7mer
487-512
0.010
0
H19
hsa-miR-107
0.788
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000439725
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
667-688
0.032
5
CTA-992D9.6
hsa-miR-107
0.788
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000453934
Biotype: lincRNA
Gene id: ENSG00000236858
Gene Name: CTA-992D9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2215-2241
0.023
3
7mer
177-199
0.006
1
6mer
2086-2104
0.004
0
LINC01354
hsa-miR-107
0.788
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435574
Biotype: lincRNA
Gene id: ENSG00000231768
Gene Name: LINC01354
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
675-695
0.023
2
7mer
1473-1493
0.007
5
6mer
792-819
0.002
2
RP11-436F23.1
hsa-miR-107
0.788
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502455
Biotype: antisense
Gene id: ENSG00000249330
Gene Name: RP11-436F23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
492-518
0.015
4
6mer
451-472
0.012
7
6mer
112-135
0.003
1
6mer
175-192
0.003
1
RP11-143K11.7
hsa-miR-107
0.787
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613523
Biotype: antisense
Gene id: ENSG00000277728
Gene Name: RP11-143K11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-451
0.027
2
6mer
143-162
0.005
3
RP11-1260E13.4
hsa-miR-107
0.787
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570711
Biotype: antisense
Gene id: ENSG00000262061
Gene Name: RP11-1260E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-65
0.014
0
8mer
84-100
0.014
Not Conserved
6mer
957-977
0.004
Not Conserved
RP11-1260E13.4
hsa-miR-107
0.786
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574432
Biotype: processed_transcript
Gene id: ENSG00000262061
Gene Name: RP11-1260E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-65
0.014
0
8mer
84-100
0.014
Not Conserved
6mer
961-981
0.004
Not Conserved
RP11-218I7.2
hsa-miR-107
0.785
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437881
Biotype: lincRNA
Gene id: ENSG00000228739
Gene Name: RP11-218I7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-177
0.032
1
NUTM2A-AS1
hsa-miR-107
0.785
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420424
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-104
0.026
2
6mer
575-587
0.004
1
6mer
1407-1425
0.002
1
LINC01435
hsa-miR-107
0.785
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000595603
Biotype: lincRNA
Gene id: ENSG00000229981
Gene Name: LINC01435
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
550-565
0.015
2
6mer
609-620
0.006
3
6mer
64-90
0.005
2
6mer
33-43
0.005
1
LINC01004
hsa-miR-107
0.784
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450686
Biotype: antisense
Gene id: ENSG00000228393
Gene Name: LINC01004
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-314
0.025
2
6mer
508-524
0.007
6
XLOC_005421
hsa-miR-107
0.784
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011186
Biotype: transcript isomorph
Gene id: XLOC_005421
Gene Name: XLOC_005421
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-199
0.015
0
7mer
323-342
0.007
1
6mer
12-29
0.005
1
7mer
524-548
0.003
0
6mer
775-799
0.002
0
H19
hsa-miR-107
0.784
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000414790
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
680-701
0.032
5
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