LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
MIR4534
hsa-miR-107
0.987
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
664-672
0.038
6
9mer
31044-31071
0.006
0
6mer
29708-29726
0.005
11
7mer
32463-32480
0.003
1
7mer
35239-35263
0.003
6
7mer
19495-19513
0.002
1
7mer
24942-24958
0.001
1
6mer
3115-3137
0.001
4
6mer
38397-38414
0.001
3
6mer
19617-19643
0.001
7
6mer
32075-32098
0.001
Not Conserved
6mer
20730-20743
0.001
3
6mer
23470-23494
0.001
3
6mer
19039-19056
0.001
5
6mer
46688-46712
0.001
3
6mer
52254-52277
0.001
2
6mer
5194-5218
0.001
1
6mer
37893-37920
0.001
3
6mer
25586-25602
0.001
1
6mer
31900-31924
0.001
1
6mer
48729-48755
0.001
1
6mer
42099-42117
0.001
2
6mer
34004-34029
0.001
0
6mer
41542-41561
0.001
1
6mer
28426-28448
0.001
Not Conserved
6mer
23277-23300
0.001
0
6mer
30031-30044
0.001
1
6mer
36600-36616
0.001
0
6mer
19154-19169
0.001
1
6mer
37913-37922
0.000
5
6mer
42140-42160
0.000
4
6mer
25591-25613
0.000
Not Conserved
XLOC_013778
hsa-miR-107
0.987
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028426
Biotype: transcript isomorph
Gene id: XLOC_013778
Gene Name: XLOC_013778
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-150
0.008
0
7mer
228-255
0.005
0
7mer
540-566
0.005
0
7mer
283-299
0.003
Not Conserved
6mer
69-87
0.003
0
9mer
2310-2337
0.003
Not Conserved
7mer
2623-2650
0.003
Not Conserved
7mer
754-779
0.002
Not Conserved
7mer
648-673
0.002
0
7mer
965-990
0.002
1
7mer
3976-3995
0.002
0
7mer
2466-2493
0.002
Not Conserved
7mer
2891-2918
0.002
Not Conserved
6mer
5503-5526
0.002
0
7mer
3244-3271
0.002
0
7mer
1071-1092
0.002
1
7mer
3870-3891
0.002
0
7mer
3404-3431
0.002
0
7mer
1018-1035
0.002
0
7mer
1216-1241
0.002
1
6mer
861-875
0.001
0
7mer
1416-1443
0.001
0
7mer
1269-1285
0.001
1
7mer
3560-3587
0.001
0
6mer
4693-4719
0.001
0
7mer
4481-4506
0.001
0
7mer
3817-3844
0.001
0
7mer
2571-2598
0.001
Not Conserved
6mer
808-832
0.001
0
7mer
1888-1915
0.001
Not Conserved
6mer
1124-1150
0.001
1
6mer
2204-2231
0.001
Not Conserved
7mer
1318-1334
0.001
Not Conserved
7mer
2047-2065
0.001
Not Conserved
7mer
1941-1968
0.001
Not Conserved
6mer
596-620
0.001
Not Conserved
7mer
4188-4213
0.001
Not Conserved
7mer
2151-2178
0.001
Not Conserved
7mer
2838-2865
0.001
Not Conserved
7mer
4639-4664
0.001
0
6mer
3614-3629
0.001
0
7mer
2785-2812
0.001
Not Conserved
7mer
4135-4162
0.001
Not Conserved
6mer
1995-2010
0.000
Not Conserved
RP11-849H4.4
hsa-miR-107
0.985
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502284
Biotype: antisense
Gene id: ENSG00000251143
Gene Name: RP11-849H4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-231
0.010
9
7mer
416-429
0.008
6
6mer
580-605
0.007
9
6mer
72-93
0.006
8
6mer
200-212
0.006
7
7mer
1146-1164
0.005
9
8mer
943-969
0.005
1
6mer
313-330
0.005
6
7mer
1507-1521
0.004
7
7mer
997-1020
0.003
8
6mer
223-233
0.003
3
7mer
1331-1350
0.003
4
6mer
1091-1107
0.002
7
7mer
1808-1830
0.002
7
7mer
1612-1638
0.002
5
6mer
777-801
0.002
2
6mer
3021-3040
0.001
3
6mer
1384-1401
0.001
7
6mer
3021-3042
0.001
6
6mer
1808-1827
0.001
1
6mer
1535-1551
0.001
5
6mer
1331-1352
0.001
4
XLOC_009645
hsa-miR-107
0.981
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020306
Biotype: transcript isomorph
Gene id: XLOC_009645
Gene Name: XLOC_009645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1753-1769
0.074
0
6mer
1297-1312
0.002
Not Conserved
XLOC_001079
hsa-miR-107
0.980
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000666
Biotype: transcript isomorph
Gene id: XLOC_001079
Gene Name: XLOC_001079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-469
0.074
1
XLOC_011448
hsa-miR-107
0.977
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10312-10323
0.045
7
9mer
7940-7964
0.013
4
7mer
5183-5206
0.007
5
6mer
2278-2294
0.003
5
6mer
5660-5680
0.003
5
6mer
1227-1241
0.001
1
RP11-335E6.2
hsa-miR-107
0.977
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455038
Biotype: lincRNA
Gene id: ENSG00000203605
Gene Name: RP11-335E6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
785-797
0.072
9
AC069277.2
hsa-miR-107
0.976
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432743
Biotype: lincRNA
Gene id: ENSG00000189229
Gene Name: AC069277.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-480
0.071
1
RP11-506K6.4
hsa-miR-107
0.976
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607565
Biotype: antisense
Gene id: ENSG00000272320
Gene Name: RP11-506K6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-72
0.030
1
8mer
386-411
0.029
3
8mer
352-375
0.009
1
7mer
1207-1215
0.003
0
XLOC_001401
hsa-miR-107
0.974
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-396
0.070
0
CTC-459F4.3
hsa-miR-107
0.973
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
346-373
0.015
0
7mer
740-766
0.010
0
6mer
639-654
0.010
0
7mer
1088-1107
0.008
0
7mer
747-769
0.007
0
6mer
1560-1578
0.007
0
6mer
1483-1508
0.007
0
6mer
1343-1360
0.006
0
RP11-760D2.5
hsa-miR-107
0.973
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429367
Biotype: lincRNA
Gene id: ENSG00000233288
Gene Name: RP11-760D2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
865-886
0.058
0
8mer
2337-2360
0.011
Not Conserved
STEAP2-AS1
hsa-miR-107
0.973
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433534
Biotype: retained_intron
Gene id: ENSG00000227646
Gene Name: STEAP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14-39
0.050
0
9mer
418-441
0.019
1
MIR6818
hsa-miR-107
0.972
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
43133-43142
0.006
14
8mer
12857-12873
0.006
1
7mer
37591-37609
0.006
3
9mer
46428-46450
0.005
0
8mer
39933-39949
0.004
0
7mer
25942-25965
0.003
3
6mer
587-600
0.003
1
6mer
46782-46808
0.003
7
9mer
46405-46424
0.003
1
6mer
29669-29683
0.002
1
6mer
33954-33977
0.002
1
6mer
40662-40676
0.002
7
6mer
7137-7154
0.002
3
6mer
46174-46191
0.002
3
6mer
46741-46758
0.002
13
6mer
28300-28323
0.002
6
6mer
2003-2028
0.002
1
6mer
30423-30438
0.002
1
6mer
44687-44706
0.002
4
6mer
31192-31212
0.002
1
6mer
42773-42795
0.001
4
6mer
41530-41551
0.001
4
6mer
25385-25407
0.001
4
6mer
35614-35632
0.001
0
6mer
44170-44185
0.001
1
6mer
31476-31500
0.001
5
6mer
31521-31541
0.001
1
6mer
31647-31663
0.001
0
6mer
30367-30382
0.001
1
6mer
41724-41743
0.001
0
6mer
7044-7058
0.001
1
RP11-361F15.2
hsa-miR-107
0.972
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443556
Biotype: lincRNA
Gene id: ENSG00000225135
Gene Name: RP11-361F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
33-52
0.061
5
6mer
1085-1102
0.008
5
RP11-322E11.2
hsa-miR-107
0.971
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000612496
Biotype: lincRNA
Gene id: ENSG00000275512
Gene Name: RP11-322E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2026-2050
0.041
0
8mer
484-508
0.026
0
RP11-778D9.13
hsa-miR-107
0.970
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609288
Biotype: lincRNA
Gene id: ENSG00000273181
Gene Name: RP11-778D9.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-40
0.067
2
RP11-285M22.3
hsa-miR-107
0.969
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582507
Biotype: lincRNA
Gene id: ENSG00000264262
Gene Name: RP11-285M22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-231
0.067
0
RP11-347J14.7
hsa-miR-107
0.969
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423499
Biotype: lincRNA
Gene id: ENSG00000231140
Gene Name: RP11-347J14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-417
0.067
1
AC022007.5
hsa-miR-107
0.969
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000454232
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-173
0.017
0
6mer
492-517
0.013
0
6mer
494-517
0.013
0
6mer
157-173
0.013
0
6mer
218-238
0.012
0
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