LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
RP11-166D19.1
hsa-miR-107
0.817
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531071
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
915-933
0.035
7
AC062029.1
hsa-miR-107
0.817
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453008
Biotype: antisense
Gene id: ENSG00000234028
Gene Name: AC062029.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
829-850
0.022
0
7mer
1291-1317
0.008
0
8mer
1299-1314
0.006
0
XLOC_004271
hsa-miR-107
0.817
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010613
Biotype: transcript isomorph
Gene id: XLOC_004271
Gene Name: XLOC_004271
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3901-3917
0.033
0
6mer
2353-2375
0.002
2
LINC00663
hsa-miR-107
0.817
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586645
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
671-693
0.013
1
6mer
415-436
0.009
1
7mer
1009-1025
0.006
0
6mer
1012-1025
0.004
0
6mer
1007-1025
0.003
0
RP11-673E1.1
hsa-miR-107
0.817
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510536
Biotype: lincRNA
Gene id: ENSG00000251600
Gene Name: RP11-673E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
73-95
0.035
1
RP11-12M5.3
hsa-miR-107
0.816
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415218
Biotype: antisense
Gene id: ENSG00000229407
Gene Name: RP11-12M5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-31
0.024
3
6mer
102-117
0.005
2
6mer
298-321
0.003
1
6mer
161-185
0.003
1
AC006116.15
hsa-miR-107
0.816
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593258
Biotype: sense_intronic
Gene id: ENSG00000267429
Gene Name: AC006116.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
809-826
0.021
0
6mer
907-930
0.014
0
LINC01511
hsa-miR-107
0.814
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523692
Biotype: lincRNA
Gene id: ENSG00000250584
Gene Name: LINC01511
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1395-1414
0.016
0
6mer
1374-1392
0.006
0
6mer
71-88
0.005
0
6mer
69-88
0.005
0
6mer
1271-1284
0.003
Not Conserved
RP11-103J8.2
hsa-miR-107
0.814
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000605338
Biotype: lincRNA
Gene id: ENSG00000270777
Gene Name: RP11-103J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
184-204
0.035
2
ERVK3-1
hsa-miR-107
0.812
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000608004
Biotype: lincRNA
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-250
0.035
0
XLOC_010575
hsa-miR-107
0.812
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021974
Biotype: transcript isomorph
Gene id: XLOC_010575
Gene Name: XLOC_010575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-171
0.028
1
6mer
944-968
0.007
4
RP11-174J11.1
hsa-miR-107
0.811
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451946
Biotype: lincRNA
Gene id: ENSG00000226426
Gene Name: RP11-174J11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-79
0.018
2
7mer
590-616
0.014
5
6mer
267-290
0.003
0
LOC550113
hsa-miR-107
0.810
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_046116.1
Biotype: antisense
Gene id: NR_046116.1 (gene)
Gene Name: LOC550113
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2092-2118
0.013
0
7mer
1923-1948
0.013
0
6mer
208-228
0.006
Not Conserved
6mer
2292-2307
0.003
2
RP11-945A11.2
hsa-miR-107
0.810
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525512
Biotype: lincRNA
Gene id: ENSG00000254861
Gene Name: RP11-945A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-190
0.034
0
RP11-1293J14.1
hsa-miR-107
0.808
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607415
Biotype: lincRNA
Gene id: ENSG00000271868
Gene Name: RP11-1293J14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
221-241
0.018
1
7mer
366-387
0.016
0
LINC01511
hsa-miR-107
0.808
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504989
Biotype: lincRNA
Gene id: ENSG00000250584
Gene Name: LINC01511
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1542-1561
0.014
0
6mer
1521-1539
0.005
0
6mer
115-132
0.004
0
6mer
113-132
0.003
0
6mer
1121-1145
0.003
0
6mer
1418-1431
0.003
Not Conserved
6mer
1119-1138
0.002
0
RP4-706G24.1
hsa-miR-107
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455902
Biotype: antisense
Gene id: ENSG00000231953
Gene Name: RP4-706G24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-43
0.016
1
7mer
315-337
0.007
1
6mer
236-255
0.006
1
6mer
236-253
0.005
1
RP11-231E19.1
hsa-miR-107
0.807
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000562796
Biotype: lincRNA
Gene id: ENSG00000260059
Gene Name: RP11-231E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2504-2519
0.009
5
6mer
2623-2640
0.007
4
7mer
2506-2517
0.007
3
6mer
2608-2633
0.006
5
6mer
2168-2194
0.004
1
6mer
2356-2372
0.002
1
XLOC_005951
hsa-miR-107
0.805
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011629
Biotype: transcript isomorph
Gene id: XLOC_005951
Gene Name: XLOC_005951
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-374
0.010
0
7mer
291-315
0.009
0
7mer
409-422
0.009
0
6mer
456-475
0.006
0
H19
hsa-miR-107
0.804
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000411754
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
606-627
0.034
5
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