LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
THUMPD3-AS1
hsa-miR-107
0.525
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000468186
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:9390318-9390346
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:9390318-9390346
exon
HITS-CLIP
DIRECT
LncBasev2
THUMPD3-AS1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: NR_027007.2
Biotype: lincRNA
Gene id: NR_027007.2 (gene)
Gene Name: THUMPD3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:9390318-9390346
exon
HITS-CLIP
DIRECT
LncBasev2
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:9390318-9390346
exon
HITS-CLIP
DIRECT
LncBasev2
TMEM198B
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000484016
Biotype: unitary_pseudogene
Gene id: ENSG00000182796
Gene Name: TMEM198B
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:55832302-55832330
exon
HITS-CLIP
DIRECT
LncBasev2
TMEM256-PLSCR3
hsa-miR-107
0.667
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: NR_037719.1
Biotype: sense
Gene id: NR_037719.1 (gene)
Gene Name: TMEM256-PLSCR3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Umbilical vein
HUVEC
IP
Tested Cell Line: HUVEC
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:7393161-7393192
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:7393161-7393192
exon
HITS-CLIP
DIRECT
LncBasev2
TMX2-CTNND1
hsa-miR-107
0.655
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:57712695-57712723
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:57805955-57806007
exon
HITS-CLIP
DIRECT
LncBasev2
11:57801909-57801937
exon
HITS-CLIP
DIRECT
LncBasev2
11:57816985-57817016
exon
HITS-CLIP
DIRECT
LncBasev2
11:57816985-57817016
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:57816985-57817016
exon
HITS-CLIP
DIRECT
LncBasev2
Whisnant Adam W et al. 2013
Cervix
TZMBL
IP
Tested Cell Line: TZMBL
Category: Cancer/Malignant
Experimental Condition: shRNs against HIV-1
Location
Region
Method
Result
Validation Type
Source
11:57712695-57712723
exon
HITS-CLIP
DIRECT
LncBasev2
TP73-AS1
hsa-miR-107
0.654
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000452079
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:3739190-3739218
exon
HITS-CLIP
DIRECT
LncBasev2
TP73-AS1
hsa-miR-107
0.636
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: NR_033710.1
Biotype: antisense
Gene id: NR_033710.1 (gene)
Gene Name: TP73-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:3739190-3739218
exon
HITS-CLIP
DIRECT
LncBasev2
TSEN15P1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000423257
Biotype: processed_pseudogene
Gene id: ENSG00000230865
Gene Name: TSEN15P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:17457200-17457228
exon
HITS-CLIP
DIRECT
LncBasev2
TUBAP2
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000530835
Biotype: processed_pseudogene
Gene id: ENSG00000214391
Gene Name: TUBAP2
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:90282926-90282954
exon
HITS-CLIP
DIRECT
LncBasev2
TUBBP5
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000508529
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000159247
Gene Name: TUBBP5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:138177348-138177376
exon
HITS-CLIP
DIRECT
LncBasev2
TXLNGY
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: Y
Transcript: ENST00000253320
Biotype: processed_transcript
Gene id: ENSG00000131002
Gene Name: TXLNGY
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
Y:19597041-19597069
exon
HITS-CLIP
DIRECT
LncBasev2
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
Y:19605761-19605789
exon
HITS-CLIP
DIRECT
LncBasev2
U73166.2
hsa-miR-107
0.482
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000439898
Biotype: lincRNA
Gene id: ENSG00000230454
Gene Name: U73166.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
3:50261060-50261088
exon
HITS-CLIP
DIRECT
LncBasev2
3:50261060-50261088
exon
HITS-CLIP
DIRECT
LncBasev2
U82695.10
hsa-miR-107
0.397
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000569962
Biotype: lincRNA
Gene id: ENSG00000259886
Gene Name: U82695.10
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
X:153425942-153425970
exon
HITS-CLIP
DIRECT
LncBasev2
VEZF1P1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000423931
Biotype: processed_pseudogene
Gene id: ENSG00000236229
Gene Name: VEZF1P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:193156190-193156218
exon
HITS-CLIP
DIRECT
LncBasev2
VN1R20P
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000425215
Biotype: unitary_pseudogene
Gene id: ENSG00000233121
Gene Name: VN1R20P
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:13926883-13926911
exon
HITS-CLIP
DIRECT
LncBasev2
WAC-AS1
hsa-miR-107
0.423
mTTBlnPmP
IP

Gene Details
Chromosome: 10
Transcript: ENST00000528337
Biotype: antisense
Gene id: ENSG00000254635
Gene Name: WAC-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
10:28523107-28523135
exon
HITS-CLIP
DIRECT
LncBasev2
WASH2P
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000538033
Biotype: retained_intron
Gene id: ENSG00000146556
Gene Name: WASH2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
2:113594667-113594695
exon
HITS-CLIP
DIRECT
LncBasev2
WI2-89927D4.1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000511554
Biotype: unprocessed_pseudogene
Gene id: ENSG00000248155
Gene Name: WI2-89927D4.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:2608042-2608070
exon
PAR-CLIP
DIRECT
LncBasev2
XIST
hsa-miR-107
0.798
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
X:73848786-73848814
exon
HITS-CLIP
DIRECT
LncBasev2
X:73849213-73849241
exon
HITS-CLIP
DIRECT
LncBasev2
X:73847164-73847192
exon
HITS-CLIP
DIRECT
LncBasev2
X:73825257-73825285
exon
HITS-CLIP
DIRECT
LncBasev2
X:73849213-73849241
exon
HITS-CLIP
DIRECT
LncBasev2
X:73850860-73850888
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851921-73851949
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843183-73843211
exon
HITS-CLIP
DIRECT
LncBasev2
X:73848786-73848814
exon
HITS-CLIP
DIRECT
LncBasev2
X:73847164-73847192
exon
HITS-CLIP
DIRECT
LncBasev2
X:73850074-73850102
exon
HITS-CLIP
DIRECT
LncBasev2
X:73850074-73850102
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843183-73843211
exon
HITS-CLIP
DIRECT
LncBasev2
X:73850860-73850888
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843420-73843448
exon
HITS-CLIP
DIRECT
LncBasev2
X:73849213-73849241
exon
HITS-CLIP
DIRECT
LncBasev2
X:73848786-73848814
exon
HITS-CLIP
DIRECT
LncBasev2
X:73847164-73847192
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843183-73843211
exon
HITS-CLIP
DIRECT
LncBasev2
X:73848786-73848814
exon
HITS-CLIP
DIRECT
LncBasev2
X:73850074-73850102
exon
HITS-CLIP
DIRECT
LncBasev2
X:73849213-73849241
exon
HITS-CLIP
DIRECT
LncBasev2
X:73825257-73825285
exon
HITS-CLIP
DIRECT
LncBasev2
X:73850860-73850888
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851921-73851949
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843420-73843448
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843420-73843448
exon
HITS-CLIP
DIRECT
LncBasev2
X:73825257-73825285
exon
HITS-CLIP
DIRECT
LncBasev2
X:73851921-73851949
exon
HITS-CLIP
DIRECT
LncBasev2
X:73850074-73850102
exon
HITS-CLIP
DIRECT
LncBasev2
X:73850860-73850888
exon
HITS-CLIP
DIRECT
LncBasev2
X:73848786-73848814
exon
HITS-CLIP
DIRECT
LncBasev2
X:73847164-73847192
exon
HITS-CLIP
DIRECT
LncBasev2
X:73849213-73849241
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843183-73843211
exon
HITS-CLIP
DIRECT
LncBasev2
X:73850860-73850888
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843183-73843211
exon
HITS-CLIP
DIRECT
LncBasev2
X:73843420-73843448
exon
HITS-CLIP
DIRECT
LncBasev2
X:73850074-73850102
exon
HITS-CLIP
DIRECT
LncBasev2
Kishore S et al. 2011
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:73851921-73851949
exon
PAR-CLIP
DIRECT
LncBasev2
X:73847164-73847192
exon
PAR-CLIP
DIRECT
LncBasev2
X:73848786-73848814
exon
PAR-CLIP
DIRECT
LncBasev2
XLOC_001148
hsa-miR-107
0.458
mTTBlnPmP
IP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000111
Biotype: transcript isomorph
Gene id: XLOC_001148
Gene Name: XLOC_001148
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
chr1:198899767-198899795
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
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