LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
RP11-12K6.2
hsa-miR-107
0.830
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547563
Biotype: lincRNA
Gene id: ENSG00000258235
Gene Name: RP11-12K6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-66
0.037
1
XLOC_005715
hsa-miR-107
0.829
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012166
Biotype: transcript isomorph
Gene id: XLOC_005715
Gene Name: XLOC_005715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
529-554
0.027
1
6mer
3432-3449
0.007
2
6mer
2237-2250
0.003
4
DLG1-AS1
hsa-miR-107
0.829
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000430666
Biotype: antisense
Gene id: ENSG00000227375
Gene Name: DLG1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1636-1651
0.032
1
7mer
550-564
0.004
1
CTD-2516F10.2
hsa-miR-107
0.829
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000514126
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-369
0.036
4
CTD-2516F10.2
hsa-miR-107
0.829
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000622955
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-369
0.036
4
FAM87A
hsa-miR-107
0.829
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000330148
Biotype: lincRNA
Gene id: ENSG00000182366
Gene Name: FAM87A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3107-3132
0.015
1
6mer
3448-3467
0.007
2
6mer
3878-3902
0.004
1
7mer
1802-1824
0.004
1
6mer
1410-1430
0.002
1
6mer
3261-3281
0.002
0
6mer
3024-3048
0.002
0
LINC01125
hsa-miR-107
0.829
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599015
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-290
0.036
0
XLOC_003790
hsa-miR-107
0.828
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008341
Biotype: transcript isomorph
Gene id: XLOC_003790
Gene Name: XLOC_003790
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-307
0.036
0
SEPT5-GP1BB
hsa-miR-107
0.828
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037611.1
Biotype: sense
Gene id: NR_037611.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2600-2622
0.005
5
6mer
1998-2012
0.004
12
7mer
4238-4254
0.004
4
7mer
3761-3786
0.003
4
6mer
4215-4227
0.003
6
6mer
4607-4622
0.003
1
7mer
4222-4242
0.003
6
7mer
4233-4251
0.003
2
6mer
4187-4212
0.003
4
6mer
1543-1564
0.002
8
6mer
4106-4127
0.002
5
6mer
4215-4229
0.002
4
6mer
3940-3963
0.001
1
WISP1-OT1
hsa-miR-107
0.828
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602893
Biotype: sense_intronic
Gene id: ENSG00000270132
Gene Name: WISP1-OT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-474
0.036
0
XLOC_000225
hsa-miR-107
0.828
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000966
Biotype: transcript isomorph
Gene id: XLOC_000225
Gene Name: XLOC_000225
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
133-148
0.030
0
6mer
121-138
0.006
2
ZEB2-AS1
hsa-miR-107
0.828
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428623
Biotype: antisense
Gene id: ENSG00000238057
Gene Name: ZEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-311
0.036
2
LINC00927
hsa-miR-107
0.828
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558913
Biotype: lincRNA
Gene id: ENSG00000259361
Gene Name: LINC00927
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-290
0.021
1
8mer
2321-2341
0.012
0
6mer
1394-1419
0.002
1
6mer
2078-2097
0.001
Not Conserved
CTD-3126B10.1
hsa-miR-107
0.827
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562166
Biotype: antisense
Gene id: ENSG00000261093
Gene Name: CTD-3126B10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-33
0.034
0
6mer
1210-1224
0.002
0
LINC01125
hsa-miR-107
0.827
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451384
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-484
0.029
0
7mer
910-931
0.008
5
XLOC_004502
hsa-miR-107
0.825
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010054
Biotype: transcript isomorph
Gene id: XLOC_004502
Gene Name: XLOC_004502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-154
0.025
1
7mer
278-303
0.011
1
XLOC_010290
hsa-miR-107
0.824
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
738-758
0.014
0
6mer
598-620
0.010
0
6mer
598-618
0.009
0
6mer
474-497
0.001
Not Conserved
6mer
474-499
0.001
Not Conserved
RP1-168P16.1
hsa-miR-107
0.823
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567166
Biotype: sense_intronic
Gene id: ENSG00000261692
Gene Name: RP1-168P16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-111
0.015
2
7mer
144-167
0.008
1
6mer
274-297
0.007
2
6mer
7-23
0.006
1
AC108488.4
hsa-miR-107
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438482
Biotype: lincRNA
Gene id: ENSG00000242282
Gene Name: AC108488.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
545-564
0.024
0
6mer
105-127
0.007
0
6mer
72-89
0.005
Not Conserved
AC084193.1
hsa-miR-107
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450290
Biotype: lincRNA
Gene id: ENSG00000230975
Gene Name: AC084193.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-501
0.032
0
6mer
340-357
0.004
1
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