LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
H19
hsa-miR-107
0.838
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000412788
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-682
0.038
5
XLOC_012720
hsa-miR-107
0.838
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026369
Biotype: transcript isomorph
Gene id: XLOC_012720
Gene Name: XLOC_012720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2358-2367
0.029
8
7mer
182-205
0.007
0
6mer
1268-1286
0.001
2
LINC01125
hsa-miR-107
0.837
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445382
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-57
0.037
0
XLOC_010146
hsa-miR-107
0.836
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020864
Biotype: transcript isomorph
Gene id: XLOC_010146
Gene Name: XLOC_010146
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-286
0.037
4
LINC00662
hsa-miR-107
0.835
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586954
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
382-406
0.021
0
6mer
2044-2068
0.012
0
7mer
379-406
0.003
Not Conserved
6mer
2046-2073
0.001
Not Conserved
XLOC_005388
hsa-miR-107
0.835
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011889
Biotype: transcript isomorph
Gene id: XLOC_005388
Gene Name: XLOC_005388
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-260
0.037
1
ZEB2-AS1
hsa-miR-107
0.835
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421083
Biotype: antisense
Gene id: ENSG00000238057
Gene Name: ZEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-355
0.037
2
DNM3OS
hsa-miR-107
0.835
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103486.1
Biotype: antisense
Gene id: NR_103486.1 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-322
0.035
1
6mer
2505-2520
0.002
1
RP11-804H8.6
hsa-miR-107
0.834
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608605
Biotype: lincRNA
Gene id: ENSG00000273356
Gene Name: RP11-804H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1578-1599
0.025
5
7mer
163-187
0.010
1
6mer
1248-1263
0.002
1
XLOC_005739
hsa-miR-107
0.834
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012742
Biotype: transcript isomorph
Gene id: XLOC_005739
Gene Name: XLOC_005739
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-332
0.032
2
6mer
219-231
0.005
1
XLOC_007644
hsa-miR-107
0.833
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016268
Biotype: transcript isomorph
Gene id: XLOC_007644
Gene Name: XLOC_007644
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-197
0.022
1
7mer
1624-1635
0.010
1
6mer
1674-1696
0.005
1
AC007278.3
hsa-miR-107
0.833
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450893
Biotype: sense_intronic
Gene id: ENSG00000234389
Gene Name: AC007278.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1166-1189
0.037
2
RP11-274B21.8
hsa-miR-107
0.833
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605692
Biotype: lincRNA
Gene id: ENSG00000270810
Gene Name: RP11-274B21.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-202
0.037
3
LINC01125
hsa-miR-107
0.833
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601499
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-421
0.037
0
RP11-497D6.5
hsa-miR-107
0.832
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606686
Biotype: lincRNA
Gene id: ENSG00000272397
Gene Name: RP11-497D6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1068-1088
0.029
5
7mer
1793-1819
0.008
1
RP6-201G10.2
hsa-miR-107
0.832
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561973
Biotype: lincRNA
Gene id: ENSG00000260118
Gene Name: RP6-201G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
698-719
0.037
1
RP11-748L13.6
hsa-miR-107
0.831
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000568270
Biotype: lincRNA
Gene id: ENSG00000260151
Gene Name: RP11-748L13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-260
0.024
1
7mer
1245-1272
0.008
1
6mer
1283-1302
0.005
1
CTD-2329C7.2
hsa-miR-107
0.831
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589967
Biotype: lincRNA
Gene id: ENSG00000266985
Gene Name: CTD-2329C7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-168
0.034
1
6mer
876-898
0.003
0
RP11-25I9.3
hsa-miR-107
0.830
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000615020
Biotype: lincRNA
Gene id: ENSG00000203334
Gene Name: RP11-25I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
813-829
0.019
4
8mer
1790-1807
0.006
0
6mer
1943-1962
0.005
1
6mer
1850-1865
0.003
2
6mer
1790-1809
0.003
1
RP11-25I9.3
hsa-miR-107
0.830
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000366160
Biotype: pseudogene
Gene id: ENSG00000203334
Gene Name: RP11-25I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
813-829
0.019
4
8mer
1787-1804
0.006
0
6mer
1940-1959
0.005
1
6mer
1847-1862
0.003
2
6mer
1787-1806
0.003
1
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