LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP3-403A15.1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000404780
Biotype: processed_pseudogene
Gene id: ENSG00000220694
Gene Name: RP3-403A15.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
6:127435882-127435910
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-405J10.3
hsa-miR-107
0.748
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000552061
Biotype: sense_intronic
Gene id: ENSG00000257298
Gene Name: RP3-405J10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
12:50185939-50185967
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-486I3.4
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000435100
Biotype: processed_pseudogene
Gene id: ENSG00000233558
Gene Name: RP3-486I3.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Umbilical vein
HUVEC
IP
Tested Cell Line: HUVEC
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:116258573-116258601
exon
HITS-CLIP
DIRECT
LncBasev2
RP3-508I15.20
hsa-miR-107
0.878
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000609428
Biotype: sense_intronic
Gene id: ENSG00000273096
Gene Name: RP3-508I15.20
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:38736760-38736788
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-601P9.1
hsa-miR-107
0.402
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000547876
Biotype: lincRNA
Gene id: ENSG00000257517
Gene Name: RP4-601P9.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
12:114768744-114768772
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-622L5.2
hsa-miR-107
0.442
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000515055
Biotype: sense_intronic
Gene id: ENSG00000250135
Gene Name: RP4-622L5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Umbilical vein
HUVEC
IP
Tested Cell Line: HUVEC
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:32170982-32171010
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-714D9.5
hsa-miR-107
0.584
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000564623
Biotype: sense_overlapping
Gene id: ENSG00000261254
Gene Name: RP4-714D9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:100030818-100030846
exon
HITS-CLIP
DIRECT
LncBasev2
RP4-758J18.2
hsa-miR-107
0.471
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000572242
Biotype: retained_intron
Gene id: ENSG00000224870
Gene Name: RP4-758J18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Whisnant Adam W et al. 2013
Cervix
TZMBL
IP
Tested Cell Line: TZMBL
Category: Cancer/Malignant
Experimental Condition: shRNs against HIV-1
Location
Region
Method
Result
Validation Type
Source
1:1401614-1401642
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-1053E7.3
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000399029
Biotype: processed_pseudogene
Gene id: ENSG00000214812
Gene Name: RP5-1053E7.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:28121027-28121055
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-1061H20.4
hsa-miR-107
0.735
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000436334
Biotype: lincRNA
Gene id: ENSG00000177788
Gene Name: RP5-1061H20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:229269378-229269406
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-1112D6.4
hsa-miR-107
0.568
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000444259
Biotype: antisense
Gene id: ENSG00000230177
Gene Name: RP5-1112D6.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:111278639-111278667
exon
HITS-CLIP
DIRECT
LncBasev2
RP5-1180C10.2
hsa-miR-107
0.503
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: NR_037642.1
Biotype: sense
Gene id: NR_037642.1 (gene)
Gene Name: RP5-1180C10.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
1:180271934-180271965
exon
HITS-CLIP
DIRECT
LncBasev2
1:180271937-180271965
exon
HITS-CLIP
DIRECT
LncBasev2
RP6-24A23.7
hsa-miR-107
0.935
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
X:108720280-108720308
exon
HITS-CLIP
DIRECT
LncBasev2
X:108722325-108722353
exon
HITS-CLIP
DIRECT
LncBasev2
X:108720280-108720308
exon
HITS-CLIP
DIRECT
LncBasev2
X:108720280-108720308
exon
HITS-CLIP
DIRECT
LncBasev2
Hafner M. et al. 2010
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:108722325-108722353
exon
PAR-CLIP
DIRECT
LncBasev2
Kishore S et al. 2011
Kidney
HEK293
IP
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:108722325-108722353
exon
PAR-CLIP
DIRECT
LncBasev2
RPL14P1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000484568
Biotype: processed_pseudogene
Gene id: ENSG00000139239
Gene Name: RPL14P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:62965749-62965801
exon
HITS-CLIP
DIRECT
LncBasev2
RPL24P8
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000446071
Biotype: processed_pseudogene
Gene id: ENSG00000236801
Gene Name: RPL24P8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:70217502-70217530
exon
HITS-CLIP
DIRECT
LncBasev2
RPL27AP
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000358609
Biotype: processed_pseudogene
Gene id: ENSG00000215467
Gene Name: RPL27AP
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:43653116-43653144
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:43653095-43653144
exon
HITS-CLIP
DIRECT
LncBasev2
RPL4P4
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000422486
Biotype: processed_pseudogene
Gene id: ENSG00000229638
Gene Name: RPL4P4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:185417708-185417739
exon
HITS-CLIP
DIRECT
LncBasev2
3:185417708-185417739
exon
HITS-CLIP
DIRECT
LncBasev2
RPLP0P6
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 2
Transcript: ENST00000394878
Biotype: processed_pseudogene
Gene id: ENSG00000213553
Gene Name: RPLP0P6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:38482491-38482519
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482152-38482183
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482491-38482519
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482491-38482519
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482061-38482089
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482152-38482183
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482152-38482183
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
2:38482491-38482519
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482152-38482183
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:38482152-38482183
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482491-38482519
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482491-38482519
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482152-38482183
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:38482491-38482519
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482152-38482183
exon
HITS-CLIP
DIRECT
LncBasev2
RPS19P3
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000480487
Biotype: processed_pseudogene
Gene id: ENSG00000240463
Gene Name: RPS19P3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:34568953-34568981
exon
HITS-CLIP
DIRECT
LncBasev2
RPSAP42
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000403415
Biotype: processed_pseudogene
Gene id: ENSG00000219463
Gene Name: RPSAP42
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:137995509-137995540
exon
HITS-CLIP
DIRECT
LncBasev2
6:137995509-137995540
exon
HITS-CLIP
DIRECT
LncBasev2
6:137995509-137995540
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:137995509-137995540
exon
HITS-CLIP
DIRECT
LncBasev2
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