LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
RP11-212I21.2
hsa-miR-107
0.845
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569037
Biotype: lincRNA
Gene id: ENSG00000260135
Gene Name: RP11-212I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
85-112
0.035
3
6mer
106-123
0.003
0
XLOC_001310
hsa-miR-107
0.844
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003537
Biotype: transcript isomorph
Gene id: XLOC_001310
Gene Name: XLOC_001310
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
961-979
0.038
1
LINC01030
hsa-miR-107
0.844
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_104062.1
Biotype: lincRNA
Gene id: NR_104062.1 (gene)
Gene Name: LINC01030
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-131
0.020
0
7mer
694-720
0.006
0
7mer
697-720
0.005
0
6mer
673-686
0.003
0
6mer
452-461
0.003
1
ZEB2-AS1
hsa-miR-107
0.843
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602006
Biotype: antisense
Gene id: ENSG00000238057
Gene Name: ZEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-530
0.038
2
LINC00305
hsa-miR-107
0.843
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000456505
Biotype: lincRNA
Gene id: ENSG00000179676
Gene Name: LINC00305
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-31
0.038
1
AC012501.2
hsa-miR-107
0.843
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454537
Biotype: sense_overlapping
Gene id: ENSG00000227400
Gene Name: AC012501.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-239
0.034
5
6mer
314-340
0.004
Not Conserved
XLOC_011952
hsa-miR-107
0.843
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024668
Biotype: transcript isomorph
Gene id: XLOC_011952
Gene Name: XLOC_011952
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
87-114
0.035
3
6mer
108-125
0.003
0
AC004158.3
hsa-miR-107
0.842
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564508
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3107-3128
0.011
1
7mer
1544-1570
0.007
8
6mer
75-97
0.006
6
6mer
4169-4187
0.006
3
6mer
3741-3767
0.005
8
6mer
3238-3256
0.003
10
LINC01013
hsa-miR-107
0.842
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447481
Biotype: lincRNA
Gene id: ENSG00000228495
Gene Name: LINC01013
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-719
0.038
3
XLOC_001562
hsa-miR-107
0.841
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002711
Biotype: transcript isomorph
Gene id: XLOC_001562
Gene Name: XLOC_001562
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-560
0.024
0
7mer
1001-1027
0.008
0
8mer
1009-1024
0.006
0
CTA-414D7.1
hsa-miR-107
0.841
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-309
0.010
2
8mer
8210-8235
0.009
1
8mer
4487-4504
0.005
0
6mer
295-316
0.003
0
7mer
9289-9306
0.002
1
6mer
341-367
0.002
Not Conserved
6mer
3950-3975
0.002
1
6mer
6861-6878
0.002
1
7mer
2753-2765
0.001
0
6mer
2876-2893
0.001
0
6mer
1260-1277
0.001
0
6mer
2751-2767
0.001
1
6mer
1260-1279
0.000
1
CTA-246H3.12
hsa-miR-107
0.840
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609330
Biotype: lincRNA
Gene id: ENSG00000272942
Gene Name: CTA-246H3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
107-124
0.024
0
6mer
97-120
0.014
0
RP3-399L15.3
hsa-miR-107
0.840
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436876
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
537-552
0.038
4
C1orf132
hsa-miR-107
0.840
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000487977
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2870-2886
0.009
7
7mer
2873-2899
0.009
7
6mer
2426-2453
0.006
6
6mer
2876-2899
0.005
4
6mer
189-210
0.003
0
8mer
1361-1381
0.002
0
6mer
1030-1052
0.002
3
6mer
2350-2370
0.001
1
6mer
1705-1721
0.001
0
LINC01125
hsa-miR-107
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599959
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-260
0.038
0
LINC01125
hsa-miR-107
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594273
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-263
0.038
0
RP11-344B5.2
hsa-miR-107
0.839
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455981
Biotype: lincRNA
Gene id: ENSG00000224307
Gene Name: RP11-344B5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-172
0.038
1
RP1-225E12.2
hsa-miR-107
0.839
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000588529
Biotype: antisense
Gene id: ENSG00000231329
Gene Name: RP1-225E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-425
0.022
11
7mer
520-544
0.011
2
6mer
727-739
0.003
1
6mer
361-386
0.002
3
LINC00670
hsa-miR-107
0.838
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577679
Biotype: lincRNA
Gene id: ENSG00000179136
Gene Name: LINC00670
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-101
0.032
1
6mer
1063-1088
0.005
1
RP11-1260E13.4
hsa-miR-107
0.838
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575743
Biotype: retained_intron
Gene id: ENSG00000262061
Gene Name: RP11-1260E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-71
0.016
Not Conserved
8mer
25-36
0.014
0
6mer
2199-2219
0.004
Not Conserved
6mer
1268-1290
0.004
3
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