LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
RP11-731J8.2
hsa-miR-107
0.732
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:47437626-47437654
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-775D22.2
hsa-miR-107
0.463
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000469264
Biotype: antisense
Gene id: ENSG00000229196
Gene Name: RP11-775D22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:130142329-130142357
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-778D9.4
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000433853
Biotype: processed_pseudogene
Gene id: ENSG00000228205
Gene Name: RP11-778D9.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS27a
IP
Tested Cell Line: HS27a
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:184150046-184150074
exon
HITS-CLIP
DIRECT
LncBasev2
3:184150247-184150275
exon
HITS-CLIP
DIRECT
LncBasev2
3:184150046-184150074
exon
HITS-CLIP
DIRECT
LncBasev2
3:184150046-184150074
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-785H5.1
hsa-miR-107
0.737
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000544420
Biotype: lincRNA
Gene id: ENSG00000256537
Gene Name: RP11-785H5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:11172086-11172114
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-178F10.3
hsa-miR-107
0.528
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000623730
Biotype: TEC
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
17:18326742-18326770
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-794P6.2
hsa-miR-107
0.422
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000528953
Biotype: antisense
Gene id: ENSG00000255093
Gene Name: RP11-794P6.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
11:111455782-111455810
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-798M19.6
hsa-miR-107
0.723
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000609900
Biotype: antisense
Gene id: ENSG00000272870
Gene Name: RP11-798M19.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:173369727-173369755
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-7F17.8
hsa-miR-107
0.415
mTTBlnPmP
IP

Gene Details
Chromosome: 14
Transcript: ENST00000619017
Biotype: antisense
Gene id: ENSG00000273729
Gene Name: RP11-7F17.8
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
14:77028060-77028088
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-802E16.3
hsa-miR-107
0.411
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000526897
Biotype: antisense
Gene id: ENSG00000255031
Gene Name: RP11-802E16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:68053017-68053045
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-884K10.7
hsa-miR-107
0.501
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000607783
Biotype: antisense
Gene id: ENSG00000271976
Gene Name: RP11-884K10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:53859916-53859944
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-191J18.65
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000412741
Biotype: processed_pseudogene
Gene id: ENSG00000224987
Gene Name: RP1-191J18.65
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
6:107985257-107985285
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-94L15.2
hsa-miR-107
0.518
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:39762492-39762520
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-95M15.2
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000404534
Biotype: processed_pseudogene
Gene id: ENSG00000220412
Gene Name: RP11-95M15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:137706542-137706570
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-981G7.1
hsa-miR-107
0.847
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000562242
Biotype: sense_overlapping
Gene id: ENSG00000261451
Gene Name: RP11-981G7.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:10436829-10436857
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-228H13.5
hsa-miR-107
0.553
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000565390
Biotype: sense_overlapping
Gene id: ENSG00000260920
Gene Name: RP1-228H13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:40465036-40465064
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-283E3.8
hsa-miR-107
0.572
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000598846
Biotype: processed_transcript
Gene id: ENSG00000268575
Gene Name: RP1-283E3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:1734771-1734802
exon
HITS-CLIP
DIRECT
LncBasev2
RP13-514E23.1
hsa-miR-107
0.500
mTTBlnPmP
IP

Gene Details
Chromosome: 4
Transcript: ENST00000564854
Biotype: sense_overlapping
Gene id: ENSG00000261496
Gene Name: RP13-514E23.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
4:86012423-86012451
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-60O19.1
hsa-miR-107
0.365
mTTBlnPmP
IP

Gene Details
Chromosome: 6
Transcript: ENST00000607090
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:106774502-106774530
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-89D4.1
hsa-miR-107
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000473603
Biotype: processed_pseudogene
Gene id: ENSG00000241255
Gene Name: RP1-89D4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:33237391-33237419
exon
HITS-CLIP
DIRECT
LncBasev2
11:33237391-33237419
exon
HITS-CLIP
DIRECT
LncBasev2
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:33237391-33237419
exon
PAR-CLIP
DIRECT
LncBasev2
RP3-368A4.6
hsa-miR-107
0.387
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000604070
Biotype: sense_intronic
Gene id: ENSG00000271533
Gene Name: RP3-368A4.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary

miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:74210219-74210247
exon
HITS-CLIP
DIRECT
LncBasev2
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