LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
LINC01351
hsa-miR-107
0.859
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424735
Biotype: lincRNA
Gene id: ENSG00000237457
Gene Name: LINC01351
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-253
0.026
1
7mer
358-373
0.014
1
RP1-257A7.4
hsa-miR-107
0.859
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606150
Biotype: antisense
Gene id: ENSG00000215022
Gene Name: RP1-257A7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1528-1549
0.028
1
8mer
1827-1839
0.010
0
6mer
1706-1722
0.002
1
RP11-454P21.1
hsa-miR-107
0.858
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514771
Biotype: lincRNA
Gene id: ENSG00000249937
Gene Name: RP11-454P21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
621-638
0.040
0
CTC-479C5.10
hsa-miR-107
0.858
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000572067
Biotype: lincRNA
Gene id: ENSG00000263126
Gene Name: CTC-479C5.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1634-1658
0.008
8
7mer
1068-1092
0.007
Not Conserved
6mer
3736-3762
0.005
7
6mer
37-61
0.005
9
7mer
851-868
0.004
1
6mer
600-617
0.003
6
6mer
663-682
0.002
8
6mer
663-684
0.002
7
6mer
2436-2455
0.001
2
6mer
1107-1121
0.001
6
6mer
1677-1692
0.001
1
6mer
2492-2515
0.000
3
6mer
2463-2475
0.000
1
6mer
2436-2457
0.000
2
7mer
2446-2473
0.000
0
6mer
2445-2470
0.000
0
XLOC_007305
hsa-miR-107
0.856
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015935
Biotype: transcript isomorph
Gene id: XLOC_007305
Gene Name: XLOC_007305
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-28
0.040
1
CECR7
hsa-miR-107
0.856
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609596
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2032-2056
0.036
0
6mer
637-656
0.004
1
XLOC_003911
hsa-miR-107
0.856
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008452
Biotype: transcript isomorph
Gene id: XLOC_003911
Gene Name: XLOC_003911
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-179
0.040
1
RP4-756G23.5
hsa-miR-107
0.856
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000451176
Biotype: antisense
Gene id: ENSG00000235513
Gene Name: RP4-756G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
670-694
0.030
0
6mer
121-143
0.010
11
XLOC_001200
hsa-miR-107
0.855
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001819
Biotype: transcript isomorph
Gene id: XLOC_001200
Gene Name: XLOC_001200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
292-305
0.012
1
7mer
102-118
0.008
Not Conserved
6mer
9237-9262
0.006
1
7mer
4017-4032
0.004
Not Conserved
7mer
2898-2924
0.003
1
6mer
7918-7935
0.003
5
6mer
7611-7633
0.002
4
6mer
3778-3798
0.001
2
RP11-499E18.1
hsa-miR-107
0.855
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512915
Biotype: lincRNA
Gene id: ENSG00000248161
Gene Name: RP11-499E18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-508
0.036
5
6mer
40-67
0.004
0
CTBP1-AS2
hsa-miR-107
0.855
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
264-289
0.029
1
6mer
1724-1740
0.011
1
LINC00689
hsa-miR-107
0.854
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000413238
Biotype: lincRNA
Gene id: ENSG00000231419
Gene Name: LINC00689
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-336
0.010
0
7mer
236-254
0.009
Not Conserved
7mer
392-418
0.008
1
7mer
3478-3501
0.006
1
6mer
4152-4179
0.002
1
6mer
3915-3933
0.002
2
6mer
1025-1041
0.001
0
RP11-23J9.4
hsa-miR-107
0.854
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000529787
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-220
0.013
0
7mer
267-290
0.008
8
6mer
4776-4798
0.005
7
6mer
299-320
0.003
5
7mer
3161-3177
0.003
0
6mer
4776-4800
0.002
7
6mer
1821-1841
0.002
6
6mer
4535-4549
0.001
1
6mer
1639-1651
0.001
2
RP11-58A18.1
hsa-miR-107
0.854
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565822
Biotype: lincRNA
Gene id: ENSG00000261161
Gene Name: RP11-58A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
367-387
0.040
0
HLA-F-AS1
hsa-miR-107
0.854
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458236
Biotype: processed_transcript
Gene id: ENSG00000214922
Gene Name: HLA-F-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1385-1405
0.031
1
7mer
2744-2760
0.005
0
6mer
2747-2772
0.003
0
XLOC_004889
hsa-miR-107
0.853
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010379
Biotype: transcript isomorph
Gene id: XLOC_004889
Gene Name: XLOC_004889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-185
0.039
1
RP4-761J14.8
hsa-miR-107
0.853
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000589924
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
512-535
0.005
4
7mer
524-547
0.005
1
7mer
505-526
0.004
2
7mer
505-532
0.004
3
7mer
502-523
0.004
1
7mer
515-538
0.004
1
7mer
518-541
0.004
1
7mer
521-544
0.003
0
7mer
505-529
0.003
1
7mer
502-520
0.003
0
LINC01351
hsa-miR-107
0.852
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436905
Biotype: lincRNA
Gene id: ENSG00000237457
Gene Name: LINC01351
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
173-199
0.025
1
7mer
304-319
0.014
1
MIR503HG
hsa-miR-107
0.852
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000440570
Biotype: lincRNA
Gene id: ENSG00000223749
Gene Name: MIR503HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-73
0.039
4
LINC00839
hsa-miR-107
0.852
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429940
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2032-2057
0.017
1
6mer
91-110
0.011
1
6mer
1226-1249
0.011
1
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