LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-107


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Gene
miRNA
Score
DIANA Links
LINC01431
hsa-miR-107
0.877
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000444981
Biotype: lincRNA
Gene id: ENSG00000232645
Gene Name: LINC01431
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-350
0.043
0
CTD-2145A24.5
hsa-miR-107
0.876
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584957
Biotype: lincRNA
Gene id: ENSG00000265478
Gene Name: CTD-2145A24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
906-926
0.043
1
RP11-53O19.3
hsa-miR-107
0.875
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607056
Biotype: lincRNA
Gene id: ENSG00000272335
Gene Name: RP11-53O19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2009-2029
0.031
Not Conserved
7mer
1788-1812
0.012
2
PCAT19
hsa-miR-107
0.874
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594315
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1007-1019
0.015
1
6mer
803-815
0.014
1
7mer
952-975
0.013
0
RP11-15K3.1
hsa-miR-107
0.874
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000418379
Biotype: lincRNA
Gene id: ENSG00000236373
Gene Name: RP11-15K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-196
0.042
2
RP11-173D14.3
hsa-miR-107
0.874
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430931
Biotype: lincRNA
Gene id: ENSG00000229495
Gene Name: RP11-173D14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1414-1438
0.042
0
PPP3CB-AS1
hsa-miR-107
0.873
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000597958
Biotype: antisense
Gene id: ENSG00000221817
Gene Name: PPP3CB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
721-744
0.012
7
7mer
721-747
0.012
7
6mer
724-749
0.012
9
6mer
704-729
0.006
6
XLOC_004362
hsa-miR-107
0.873
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009934
Biotype: transcript isomorph
Gene id: XLOC_004362
Gene Name: XLOC_004362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4063-4089
0.023
1
6mer
404-414
0.006
2
6mer
7528-7544
0.005
1
6mer
683-700
0.004
1
6mer
2302-2327
0.001
Not Conserved
6mer
1327-1350
0.001
Not Conserved
6mer
6341-6368
0.001
Not Conserved
6mer
1327-1352
0.001
Not Conserved
XLOC_010934
hsa-miR-107
0.872
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022633
Biotype: transcript isomorph
Gene id: XLOC_010934
Gene Name: XLOC_010934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-458
0.032
0
7mer
26-49
0.010
0
XLOC_012139
hsa-miR-107
0.872
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025161
Biotype: transcript isomorph
Gene id: XLOC_012139
Gene Name: XLOC_012139
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
306-324
0.026
1
7mer
105-129
0.016
1
FAM66C
hsa-miR-107
0.870
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000438689
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-178
0.042
0
LINC00400
hsa-miR-107
0.870
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000425609
Biotype: lincRNA
Gene id: ENSG00000229928
Gene Name: LINC00400
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
516-542
0.029
3
7mer
244-260
0.013
3
RP11-66N24.7
hsa-miR-107
0.869
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000622438
Biotype: antisense
Gene id: ENSG00000273618
Gene Name: RP11-66N24.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-125
0.030
4
6mer
124-145
0.005
7
6mer
374-394
0.005
3
6mer
735-756
0.002
1
RP11-574K11.29
hsa-miR-107
0.869
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000415917
Biotype: lincRNA
Gene id: ENSG00000272140
Gene Name: RP11-574K11.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-212
0.018
1
6mer
374-391
0.013
1
7mer
816-837
0.011
0
ABHD14A-ACY1
hsa-miR-107
0.868
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037192.1
Biotype: sense
Gene id: NR_037192.1 (gene)
Gene Name: ABHD14A-ACY1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1686-1710
0.008
8
7mer
392-408
0.008
5
7mer
213-240
0.007
5
6mer
1538-1561
0.006
7
7mer
1615-1639
0.005
4
6mer
1630-1641
0.004
7
6mer
608-626
0.002
3
6mer
112-134
0.002
1
RP11-646E18.2
hsa-miR-107
0.868
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492416
Biotype: lincRNA
Gene id: ENSG00000238837
Gene Name: RP11-646E18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-45
0.041
2
TTC28-AS1
hsa-miR-107
0.867
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428584
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1912-1931
0.011
1
6mer
118-134
0.008
9
7mer
821-842
0.006
6
6mer
827-844
0.003
10
7mer
2729-2750
0.003
2
7mer
2216-2233
0.003
1
8mer
4514-4541
0.003
0
6mer
509-520
0.003
1
6mer
5099-5116
0.002
1
RP4-756G23.5
hsa-miR-107
0.867
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441316
Biotype: antisense
Gene id: ENSG00000235513
Gene Name: RP4-756G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2386-2410
0.028
0
6mer
681-703
0.007
11
7mer
904-928
0.004
1
7mer
901-928
0.002
1
AC012593.1
hsa-miR-107
0.867
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588944
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-848
0.041
0
FEZF1-AS1
hsa-miR-107
0.867
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000428449
Biotype: antisense
Gene id: ENSG00000230316
Gene Name: FEZF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-107
Sequence: agcagcauuguacagggcuauca
MirBase ID: MIMAT0000104
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-102
0.032
6
6mer
344-366
0.006
7
6mer
1913-1923
0.003
4
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