LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
SLC8A1-AS1
hsa-miR-106b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620276
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-102
0.025
1
RP11-627G18.4
hsa-miR-106b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578741
Biotype: lincRNA
Gene id: ENSG00000264825
Gene Name: RP11-627G18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-194
0.012
1
6mer
85-101
0.007
3
6mer
132-141
0.006
1
MYHAS
hsa-miR-106b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587182
Biotype: antisense
Gene id: ENSG00000272975
Gene Name: MYHAS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1991-2013
0.011
Not Conserved
7mer
552-567
0.010
0
6mer
194-215
0.004
1
RP11-117D22.2
hsa-miR-106b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449958
Biotype: lincRNA
Gene id: ENSG00000230138
Gene Name: RP11-117D22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
616-631
0.016
0
8mer
98-124
0.008
0
A2M-AS1
hsa-miR-106b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499762
Biotype: antisense
Gene id: ENSG00000245105
Gene Name: A2M-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1928-1938
0.011
0
7mer
1628-1635
0.010
1
6mer
1630-1641
0.002
0
6mer
1202-1228
0.002
0
RP11-91G21.1
hsa-miR-106b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597953
Biotype: lincRNA
Gene id: ENSG00000268129
Gene Name: RP11-91G21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-14
0.025
1
AC105339.1
hsa-miR-106b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440089
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-187
0.014
4
6mer
471-489
0.011
6
AC023481.1
hsa-miR-106b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000435368
Biotype: lincRNA
Gene id: ENSG00000231401
Gene Name: AC023481.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-250
0.018
1
7mer
93-109
0.007
0
FRMD6-AS1
hsa-miR-106b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000617151
Biotype: antisense
Gene id: ENSG00000273888
Gene Name: FRMD6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-173
0.015
0
8mer
510-526
0.007
1
8mer
1140-1157
0.003
Not Conserved
AC005754.7
hsa-miR-106b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607216
Biotype: antisense
Gene id: ENSG00000272154
Gene Name: AC005754.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-36
0.014
0
7mer
402-414
0.011
3
RP11-517B11.7
hsa-miR-106b-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000565095
Biotype: sense_overlapping
Gene id: ENSG00000261167
Gene Name: RP11-517B11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3194-3214
0.005
1
8mer
2311-2335
0.005
1
6mer
39-61
0.005
1
6mer
2411-2437
0.003
3
6mer
188-206
0.003
1
6mer
2058-2080
0.002
2
LA16c-360H6.3
hsa-miR-106b-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574245
Biotype: antisense
Gene id: ENSG00000262899
Gene Name: LA16c-360H6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-291
0.015
0
8mer
219-235
0.009
1
CTD-2349P21.5
hsa-miR-106b-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579639
Biotype: lincRNA
Gene id: ENSG00000263603
Gene Name: CTD-2349P21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-256
0.025
1
XLOC_005622
hsa-miR-106b-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012092
Biotype: transcript isomorph
Gene id: XLOC_005622
Gene Name: XLOC_005622
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2157-2174
0.008
1
8mer
1405-1421
0.005
1
6mer
308-325
0.005
2
6mer
320-325
0.004
0
6mer
559-585
0.003
0
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