LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008014
hsa-miR-106b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017432
Biotype: transcript isomorph
Gene id: XLOC_008014
Gene Name: XLOC_008014
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1704-1721
0.015
2
7mer
122-132
0.010
2
PCAT5
hsa-miR-106b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_110138.1
Biotype: lincRNA
Gene id: NR_110138.1 (gene)
Gene Name: PCAT5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
949-969
0.010
1
7mer
146-167
0.009
0
6mer
420-443
0.003
2
6mer
2739-2761
0.003
1
RP11-53O19.2
hsa-miR-106b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511712
Biotype: lincRNA
Gene id: ENSG00000248779
Gene Name: RP11-53O19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
565-590
0.025
1
RP11-243E13.2
hsa-miR-106b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580258
Biotype: lincRNA
Gene id: ENSG00000266102
Gene Name: RP11-243E13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
74-97
0.025
1
RP11-626K17.3
hsa-miR-106b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565549
Biotype: lincRNA
Gene id: ENSG00000261541
Gene Name: RP11-626K17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3533-3549
0.008
0
7mer
998-1021
0.006
1
8mer
2209-2226
0.005
0
6mer
3851-3870
0.005
1
6mer
1816-1837
0.001
0
RP11-440D17.3
hsa-miR-106b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609975
Biotype: lincRNA
Gene id: ENSG00000272913
Gene Name: RP11-440D17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1052-1067
0.019
1
6mer
42-58
0.006
0
H19
hsa-miR-106b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000422826
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
627-643
0.022
1
6mer
1524-1542
0.003
1
XXbac-BPG308K3.6
hsa-miR-106b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606727
Biotype: lincRNA
Gene id: ENSG00000225595
Gene Name: XXbac-BPG308K3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1160-1177
0.013
0
7mer
232-249
0.012
1
LINC00886
hsa-miR-106b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472943
Biotype: lincRNA
Gene id: ENSG00000240875
Gene Name: LINC00886
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2469-2486
0.009
1
7mer
1046-1071
0.004
0
6mer
3170-3182
0.004
0
6mer
698-712
0.004
1
6mer
2448-2474
0.002
3
6mer
2189-2214
0.002
1
RP11-430C1.1
hsa-miR-106b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568279
Biotype: lincRNA
Gene id: ENSG00000261807
Gene Name: RP11-430C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
644-661
0.007
1
7mer
1369-1390
0.006
0
8mer+wobble
3218-3239
0.003
1
6mer
5435-5448
0.003
1
6mer
2811-2827
0.002
1
6mer
2361-2374
0.002
0
6mer
1881-1892
0.002
3
6mer
1420-1440
0.001
1
XLOC_010966
hsa-miR-106b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022669
Biotype: transcript isomorph
Gene id: XLOC_010966
Gene Name: XLOC_010966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
684-697
0.025
0
AL133243.2
hsa-miR-106b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617415
Biotype: sense_intronic
Gene id: ENSG00000276517
Gene Name: AL133243.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2920-2943
0.009
2
6mer
2971-2990
0.008
1
6mer
929-948
0.003
0
6mer
719-742
0.003
0
6mer
2256-2282
0.003
0
XLOC_008072
hsa-miR-106b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017250
Biotype: transcript isomorph
Gene id: XLOC_008072
Gene Name: XLOC_008072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4170-4192
0.006
1
6mer
3582-3602
0.004
0
6mer
656-676
0.003
1
6mer
1381-1406
0.003
1
6mer
2870-2889
0.002
2
6mer
677-701
0.002
1
6mer
3237-3257
0.002
0
6mer
2963-2977
0.001
1
RP11-153M7.5
hsa-miR-106b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505051
Biotype: antisense
Gene id: ENSG00000249309
Gene Name: RP11-153M7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-475
0.025
1
A2M-AS1
hsa-miR-106b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_026971.1
Biotype: antisense
Gene id: NR_026971.1 (gene)
Gene Name: A2M-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1928-1938
0.011
0
7mer
1628-1635
0.010
1
6mer
1630-1641
0.002
0
6mer
1202-1228
0.002
0
AC084219.4
hsa-miR-106b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592946
Biotype: antisense
Gene id: ENSG00000186019
Gene Name: AC084219.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2616-2640
0.019
0
6mer
80-105
0.006
0
FAM87A
hsa-miR-106b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000613235
Biotype: pseudogene
Gene id: ENSG00000182366
Gene Name: FAM87A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-73
0.022
0
6mer
218-234
0.002
Not Conserved
RP11-63E9.1
hsa-miR-106b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000565399
Biotype: lincRNA
Gene id: ENSG00000259828
Gene Name: RP11-63E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2963-2985
0.007
6
6mer
871-884
0.005
3
6mer
3450-3470
0.005
2
6mer
170-196
0.004
0
6mer
3527-3543
0.004
1
XLOC_006128
hsa-miR-106b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-172
0.020
0
6mer
541-553
0.005
0
XLOC_006942
hsa-miR-106b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014875
Biotype: transcript isomorph
Gene id: XLOC_006942
Gene Name: XLOC_006942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1000-1007
0.011
1
7mer
1526-1544
0.008
1
6mer
1065-1083
0.003
1
6mer
1000-1014
0.002
1
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