LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
ZMIZ1-AS1
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428862
Biotype: antisense
Gene id: ENSG00000224596
Gene Name: ZMIZ1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
911-925
0.025
0
EPB41L4A-AS1
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000413221
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2830-2851
0.015
2
7mer
991-1004
0.007
1
6mer
661-669
0.004
1
RP11-254F19.3
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569104
Biotype: lincRNA
Gene id: ENSG00000260340
Gene Name: RP11-254F19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-181
0.025
1
XLOC_003234
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006633
Biotype: transcript isomorph
Gene id: XLOC_003234
Gene Name: XLOC_003234
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-43
0.021
1
6mer
1762-1777
0.004
2
AC093590.1
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439734
Biotype: lincRNA
Gene id: ENSG00000238217
Gene Name: AC093590.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1408-1434
0.010
7
6mer
1109-1129
0.005
8
6mer
1834-1854
0.005
3
6mer
514-532
0.003
1
6mer
1352-1370
0.002
1
RP11-290F20.1
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_034124.1
Biotype: lincRNA
Gene id: NR_034124.1 (gene)
Gene Name: RP11-290F20.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-43
0.025
5
RPARP-AS1
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000597488
Biotype: retained_intron
Gene id: ENSG00000269609
Gene Name: RPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1842-1858
0.019
1
6mer
1396-1414
0.003
2
6mer
1052-1069
0.002
1
ZMIZ1-AS1
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_015429.1
Biotype: lincRNA
Gene id: NR_015429.1 (gene)
Gene Name: ZMIZ1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
913-927
0.025
0
ZMIZ1-AS1
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456353
Biotype: antisense
Gene id: ENSG00000224596
Gene Name: ZMIZ1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
911-925
0.025
0
XLOC_007868
hsa-miR-106b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016491
Biotype: transcript isomorph
Gene id: XLOC_007868
Gene Name: XLOC_007868
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5893-5913
0.013
1
8mer
2492-2509
0.003
1
8mer
3927-3947
0.003
0
8mer
2358-2378
0.002
1
8mer+wobble
3262-3277
0.002
0
8mer
1495-1510
0.002
0
6mer
1536-1552
0.001
1
FAM87A
hsa-miR-106b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000330148
Biotype: lincRNA
Gene id: ENSG00000182366
Gene Name: FAM87A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3543-3566
0.014
1
7mer
1377-1403
0.006
0
6mer
723-738
0.004
1
6mer
1548-1564
0.001
Not Conserved
XLOC_000697
hsa-miR-106b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001385
Biotype: transcript isomorph
Gene id: XLOC_000697
Gene Name: XLOC_000697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1588-1599
0.017
0
8mer
1541-1561
0.008
0
RP11-159H10.3
hsa-miR-106b-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000528800
Biotype: antisense
Gene id: ENSG00000246528
Gene Name: RP11-159H10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1179-1206
0.006
0
6mer
246-268
0.006
4
6mer
832-856
0.005
1
6mer
1073-1099
0.004
0
6mer
725-749
0.004
Not Conserved
LINC00700
hsa-miR-106b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454424
Biotype: lincRNA
Gene id: ENSG00000234962
Gene Name: LINC00700
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-335
0.020
1
6mer
430-446
0.005
1
RP11-685F15.1
hsa-miR-106b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509641
Biotype: lincRNA
Gene id: ENSG00000251049
Gene Name: RP11-685F15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
584-604
0.025
1
LINC01270
hsa-miR-106b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000371639
Biotype: lincRNA
Gene id: ENSG00000203999
Gene Name: LINC01270
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-43
0.025
5
KB-1107E3.1
hsa-miR-106b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518749
Biotype: antisense
Gene id: ENSG00000253629
Gene Name: KB-1107E3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-212
0.025
5
RP11-4B16.4
hsa-miR-106b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000612024
Biotype: antisense
Gene id: ENSG00000278330
Gene Name: RP11-4B16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-631
0.025
1
CTD-2547L24.3
hsa-miR-106b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554096
Biotype: antisense
Gene id: ENSG00000258875
Gene Name: CTD-2547L24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1260-1281
0.011
3
7mer
1586-1605
0.009
0
6mer
1613-1637
0.005
0
SCEL-AS1
hsa-miR-106b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456280
Biotype: antisense
Gene id: ENSG00000224347
Gene Name: SCEL-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-460
0.025
5
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