LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
GMDS-AS1
hsa-miR-106b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000505870
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
7921-7932
0.009
6
7mer
5727-5753
0.006
5
7mer
5387-5411
0.003
0
6mer
4389-4411
0.002
3
6mer
7756-7779
0.002
0
6mer
3626-3647
0.002
0
6mer
5619-5642
0.001
1
LINC01503
hsa-miR-106b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436710
Biotype: lincRNA
Gene id: ENSG00000233901
Gene Name: LINC01503
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-125
0.025
3
XLOC_011521
hsa-miR-106b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023282
Biotype: transcript isomorph
Gene id: XLOC_011521
Gene Name: XLOC_011521
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-273
0.018
1
7mer
2117-2141
0.007
1
XLOC_008863
hsa-miR-106b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018000
Biotype: transcript isomorph
Gene id: XLOC_008863
Gene Name: XLOC_008863
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
913-927
0.025
0
FAR2P2
hsa-miR-106b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046260.1
Biotype: lincRNA
Gene id: NR_046260.1 (gene)
Gene Name: FAR2P2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2415-2432
0.014
0
8mer
2555-2572
0.011
0
XLOC_005224
hsa-miR-106b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011763
Biotype: transcript isomorph
Gene id: XLOC_005224
Gene Name: XLOC_005224
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3842-3859
0.009
0
8mer
2227-2244
0.005
0
6mer
802-828
0.005
1
6mer
634-653
0.003
0
6mer
1125-1148
0.002
0
PCAT19
hsa-miR-106b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598215
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
270-294
0.013
1
6mer
373-396
0.012
1
AP000479.1
hsa-miR-106b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526436
Biotype: lincRNA
Gene id: ENSG00000255433
Gene Name: AP000479.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1210-1227
0.023
1
6mer
1520-1536
0.002
0
CTD-3099C6.9
hsa-miR-106b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598322
Biotype: sense_intronic
Gene id: ENSG00000269825
Gene Name: CTD-3099C6.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-98
0.008
0
6mer
501-526
0.004
0
6mer
2291-2315
0.003
1
6mer
654-666
0.003
0
8mer
1393-1413
0.003
0
6mer
987-1010
0.002
0
6mer
1535-1545
0.002
0
6mer
1703-1718
0.002
0
XLOC_011807
hsa-miR-106b-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024229
Biotype: transcript isomorph
Gene id: XLOC_011807
Gene Name: XLOC_011807
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
607-619
0.011
Not Conserved
8mer
1362-1379
0.006
1
7mer
915-932
0.006
0
6mer
1690-1716
0.003
1
RP11-60L3.1
hsa-miR-106b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561332
Biotype: antisense
Gene id: ENSG00000259264
Gene Name: RP11-60L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
799-819
0.025
1
XLOC_013981
hsa-miR-106b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028752
Biotype: transcript isomorph
Gene id: XLOC_013981
Gene Name: XLOC_013981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9284-9302
0.024
1
6mer
7550-7563
0.002
1
AC011524.2
hsa-miR-106b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590167
Biotype: lincRNA
Gene id: ENSG00000267027
Gene Name: AC011524.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-36
0.021
0
6mer
105-121
0.004
1
RP11-152C17.1
hsa-miR-106b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494900
Biotype: lincRNA
Gene id: ENSG00000241383
Gene Name: RP11-152C17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
413-428
0.020
1
6mer
242-258
0.005
0
ZMIZ1-AS1
hsa-miR-106b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024429.1
Biotype: lincRNA
Gene id: NR_024429.1 (gene)
Gene Name: ZMIZ1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
913-927
0.025
0
XLOC_012711
hsa-miR-106b-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026359
Biotype: transcript isomorph
Gene id: XLOC_012711
Gene Name: XLOC_012711
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-320
0.025
5
RP11-804A23.1
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000541495
Biotype: antisense
Gene id: ENSG00000255845
Gene Name: RP11-804A23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-307
0.025
1
H19
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000446406
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
621-637
0.022
1
6mer
1310-1328
0.003
1
ZMIZ1-AS1
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024431.2
Biotype: lincRNA
Gene id: NR_024431.2 (gene)
Gene Name: ZMIZ1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
913-927
0.025
0
RP4-803J11.2
hsa-miR-106b-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418348
Biotype: antisense
Gene id: ENSG00000237481
Gene Name: RP4-803J11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-251
0.019
0
6mer
198-213
0.006
1
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