LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-106b-5p


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Gene
miRNA
Score
DIANA Links
LOC101928604
hsa-miR-106b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110081.1
Biotype: antisense
Gene id: NR_110081.1 (gene)
Gene Name: LOC101928604
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
979-999
0.013
0
8mer
832-852
0.008
0
7mer
400-426
0.005
0
FOXN3-AS2
hsa-miR-106b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554071
Biotype: antisense
Gene id: ENSG00000259073
Gene Name: FOXN3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-78
0.026
2
NPSR1-AS1
hsa-miR-106b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419766
Biotype: antisense
Gene id: ENSG00000197085
Gene Name: NPSR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4761-4782
0.012
1
8mer
3292-3310
0.005
1
6mer
1074-1092
0.002
0
7mer
2460-2478
0.002
1
6mer
1563-1579
0.002
3
6mer
2808-2827
0.002
1
XLOC_013931
hsa-miR-106b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028843
Biotype: transcript isomorph
Gene id: XLOC_013931
Gene Name: XLOC_013931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
783-804
0.026
0
AC009158.1
hsa-miR-106b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000596241
Biotype: lincRNA
Gene id: ENSG00000231876
Gene Name: AC009158.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-300
0.026
4
LINC01266
hsa-miR-106b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420823
Biotype: lincRNA
Gene id: ENSG00000224957
Gene Name: LINC01266
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2489-2516
0.007
1
7mer
3120-3137
0.007
0
6mer
543-547
0.005
1
6mer
1610-1635
0.002
1
6mer
543-567
0.002
0
6mer
1805-1824
0.002
3
LRRC2-AS1
hsa-miR-106b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599511
Biotype: antisense
Gene id: ENSG00000268324
Gene Name: LRRC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1451-1467
0.010
1
7mer
846-858
0.009
2
6mer
1708-1733
0.007
3
XLOC_010891
hsa-miR-106b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022577
Biotype: transcript isomorph
Gene id: XLOC_010891
Gene Name: XLOC_010891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-256
0.014
0
7mer
219-239
0.012
0
RP1-225E12.2
hsa-miR-106b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591102
Biotype: antisense
Gene id: ENSG00000231329
Gene Name: RP1-225E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-339
0.018
1
7mer
674-686
0.007
0
ALDH1L1-AS2
hsa-miR-106b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000500525
Biotype: antisense
Gene id: ENSG00000246022
Gene Name: ALDH1L1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-495
0.016
0
7mer
999-1016
0.010
0
XLOC_005571
hsa-miR-106b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011202
Biotype: transcript isomorph
Gene id: XLOC_005571
Gene Name: XLOC_005571
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2585-2609
0.019
Not Conserved
6mer
373-397
0.002
Not Conserved
6mer
689-708
0.002
Not Conserved
6mer
1843-1860
0.001
Not Conserved
6mer
1688-1704
0.001
Not Conserved
XLOC_001212
hsa-miR-106b-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001829
Biotype: transcript isomorph
Gene id: XLOC_001212
Gene Name: XLOC_001212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-504
0.026
2
XLOC_011806
hsa-miR-106b-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024487
Biotype: transcript isomorph
Gene id: XLOC_011806
Gene Name: XLOC_011806
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-246
0.026
1
RP11-434I12.2
hsa-miR-106b-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520894
Biotype: antisense
Gene id: ENSG00000250295
Gene Name: RP11-434I12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-129
0.014
4
6mer
70-94
0.011
8
RP4-717I23.3
hsa-miR-106b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411670
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-56
0.025
3
ACVR2B-AS1
hsa-miR-106b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441531
Biotype: antisense
Gene id: ENSG00000229589
Gene Name: ACVR2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2157-2176
0.013
0
8mer
1668-1684
0.010
0
6mer
1313-1332
0.002
3
RP11-486L19.2
hsa-miR-106b-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565643
Biotype: antisense
Gene id: ENSG00000250685
Gene Name: RP11-486L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-548
0.015
1
8mer
247-264
0.009
1
6mer
1452-1468
0.002
0
LINC01426
hsa-miR-106b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420877
Biotype: antisense
Gene id: ENSG00000234380
Gene Name: LINC01426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1688-1703
0.010
1
8mer
1609-1628
0.004
0
6mer
743-768
0.004
1
6mer
1926-1944
0.004
0
6mer
2358-2375
0.003
1
RP11-672L10.1
hsa-miR-106b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564872
Biotype: lincRNA
Gene id: ENSG00000259837
Gene Name: RP11-672L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-53
0.025
1
XLOC_013840
hsa-miR-106b-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028468
Biotype: transcript isomorph
Gene id: XLOC_013840
Gene Name: XLOC_013840
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-106b-5p
Sequence: uaaagugcugacagugcagau
MirBase ID: MIMAT0000680
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-98
0.025
1
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